Osur008831.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- -
- Assembly
- GCA_004796505.1
- Location
- SSSI01009581.1:1-442[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-07 7.1e-05 22.5 0.0 2 37 12 47 11 51 0.91 2 2 0.36 1.9e+02 1.9 0.0 23 31 101 109 100 109 0.93
Sequence Information
- Coding Sequence
- ATGTCAAAAAGAGGACGTTATGGATCATGGTccgaaaatgatttattgctTGCTGTTGCCGCGTACAAAAATGGTAATTACGGTTTAAATGAGTGCAGTCGTGTGTATGGTGTTCCTAAAGCAACTATCAAGGCACATGTAGATAAAAAGAACCTTATTTGCAATAATGTTAAATCAATGGGCAGACCTCCGGTATTTTCTGCAgatatggaaaaaattatttctgagCACATCCTTCACTTAGAAGAATGCTTTTTTGGTTTAACCATCAAGGAAGTCAGAAAACTAGCTTTTGATATTGCGAGAAAATATGACTTACCAAATAGTttcaacaaagaaaaaaaaattgctggAAAAAAATGGTTCTACGCATTTTTGAAACGAAATCCCCAACTTTCGCTTCGGAAACCAAAAGGAACCTCAATGGCTAGAGCTAGAGGTT
- Protein Sequence
- MSKRGRYGSWSENDLLLAVAAYKNGNYGLNECSRVYGVPKATIKAHVDKKNLICNNVKSMGRPPVFSADMEKIISEHILHLEECFFGLTIKEVRKLAFDIARKYDLPNSFNKEKKIAGKKWFYAFLKRNPQLSLRKPKGTSMARARG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -