Basic Information

Insect: Oryzaephilus surinamensis
Gene Symbol: -
Assembly: GCA_004796505.1
Location: SSSI01002866.1:196-1971[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 9e-14 4.7e-11 42.3 0.1 2 44 16 58 15 59 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	9e-14	4.7e-11	42.3	0.1	2	44	16	58	15	59	0.95

Sequence Information

Coding Sequence: ATGCCTAGAAAGTACATTAGAAAAACTAATAGAGGATCATGGTCTCAAGAAAATTTGGAATTGGCCATTCAAAGCGTTACAGAGGAGTCGCTTAGTATAAATCAAGCCAGCAAACAGTACAATATTCCAAATCGAACCTTAAGACGGAGGATAAAAGCTAACAACTCCACAAAGTTAACACTAGGAAAACATCCCGGTCTCGGCTTCGACAACGAAAAACGTTTAGTGGCCCATATCCAACGCCTACAAGCTGCAGGTTTTGCTCCATCTCCAAAAATGGTACGTGGAATAGCGTATGGTTTTGCGAAAAGTCTTGGAAGGGAAAACATATTTGGACCAAAAGGTTCCGAAGAAGAGATGGCAGGAATCCATTGGTTTCGTTCGTTCATGGATCGGCAAAAGGATCTCTCAATAAGAGTTAGCGAGGGTTTGTCATTAGCTCGCGCCAAAGGTATGAACCGAAAAGAAGTCAACGACTTCTTCGACCTTCTTCAAAAGACATTGACTGATAACAATCTGGAAAACCAACCACACAGAATCTTTAATATGGACGAAACAGGAATACAGCTCACAAATGTACCTGGCAAAGTGGTTGCTATTAAAGGGAGCAAATGTGTCCAAACTCTAACACCTAAAGAAAAAGGTGAATCAATATCAATTATAGCGTGCATGAACGCAGAAGGTGTTTATTTACCACcagttttaataatgaaagGGGTCAGAAAATTTGCCAATAGAATAGATGGCTTACCTCCAGCATcagatatatatatgaataaaaaatcatcGTATATTAATGCAgagttatttttgaaatggtttaaagaaatatttctgCCGCGAAAGCCAAAGGAAAAAGTCCTTTTGATTTTAGATGGTCATACATCACATTGCAACAACTACGATTTACACAAACTTGCAGAAGATACAggtgttgttttattatgtttaccCAGTCATACTACTCAAGCCCTCCAACCCCTTgatcgtactttttttaagccatttaaaacttattataaaCAGGAGGCACAGGATTGGATATTTTCAAACAAGGATCGAACTTTGAACAGAGATGTGGTTGGGAAATTGATTGGAAACGCGTGGAAGAGAGCTGCTACAGTACAAAACGCAATTTCAGGATTTGATGCAACTGGTATATATCCATTTAATAGAAACAAAATACCAgattattttttcgaaatacATGATAACAGTGTAGCAAATAACACACAAGAGAATTTACCTCAAGATTTTTTCGAAGATGATGATAATTACGTGTTTCtctttgaaaatgaaaacgaaaatatttcaaacgaTGGAAATGTAAACGATGAAACGCCATCTAAATTTTTGCACGAAGTTGCACCTGTACCAATGATTCCTATTAATCAATCAAAACGGAAAATGTCAGccagaattttagtggattcTGATGAGAATTCAGTTACACAAACGGATGATGAAAGAACTGATAAAGGTACCAAGAACGAACAGATTCAGGAACCTTTAAATAGCAAGTCGAAGGGAAAAGCTGTAGCTGcgattaaaaaaaagaatagcAAGGTAAAGAAAACAAAGGTAGATTCGCAAAATGAAGAAGAGGATACCAATTGTGTTGAATGCTTAGAAAGTTATTTCCAAACAGTGGAAAACGTAGACTGGATTCAATGTGTTACATGCAAAGAATGGTTACACGAAACCTGTACCATGTATGGTGACTACTGCAACAattgtggaaaaattaaaaaaaggcAAGAAAACggaagaaattaa
Protein Sequence: MPRKYIRKTNRGSWSQENLELAIQSVTEESLSINQASKQYNIPNRTLRRRIKANNSTKLTLGKHPGLGFDNEKRLVAHIQRLQAAGFAPSPKMVRGIAYGFAKSLGRENIFGPKGSEEEMAGIHWFRSFMDRQKDLSIRVSEGLSLARAKGMNRKEVNDFFDLLQKTLTDNNLENQPHRIFNMDETGIQLTNVPGKVVAIKGSKCVQTLTPKEKGESISIIACMNAEGVYLPPVLIMKGVRKFANRIDGLPPASDIYMNKKSSYINAELFLKWFKEIFLPRKPKEKVLLILDGHTSHCNNYDLHKLAEDTGVVLLCLPSHTTQALQPLDRTFFKPFKTYYKQEAQDWIFSNKDRTLNRDVVGKLIGNAWKRAATVQNAISGFDATGIYPFNRNKIPDYFFEIHDNSVANNTQENLPQDFFEDDDNYVFLFENENENISNDGNVNDETPSKFLHEVAPVPMIPINQSKRKMSARILVDSDENSVTQTDDERTDKGTKNEQIQEPLNSKSKGKAVAAIKKKNSKVKKTKVDSQNEEEDTNCVECLESYFQTVENVDWIQCVTCKEWLHETCTMYGDYCNNCGKIKKRQENGRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -