Osur015909.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- bab2
- Assembly
- GCA_004796505.1
- Location
- SSSI01004969.1:7086-9860[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-16 2.1e-13 49.8 0.0 2 42 382 423 381 426 0.95
Sequence Information
- Coding Sequence
- atgaCAATGCAACAATATTGTTTAAGATGGAATAACCATCAACCGAATTTTATTTCTGTGTTCTCTAGTCTTCTAAATAGTGAATCCTTGGTGGATGTCACATTAGCTGCAGAAGGCAGACACTTGCAAGCCCATAAAGTTGTTTTATCTGCTTGCAGTTCATACTTTcagTCCCTATTTACAGTAAATCCTTGCCAACATCCCATTGTGATACTGAAAGACGTAAAGTTCGCTGATTTAAAAGTTATGGTggattttatgtattatggtGAGGTTAATGTTTCACAGGAACAGCTTccatatattttgaaaacagCTGAAATGTTGAAAATCAAAGgCTTAGCTGAAATGCCTGTTGATCAAtctattacaaaacaaaatagcTCTGCAGATAGAGCAGAATTATTAACACCTGGTGATTCAAATTGGAGTTCAGATGGTGTTCCAAGACAGTCTTTGTCACCCTCACCTTGTCCCCTATCACCAACAAGCAAAAGAAAACGTTTGCGTAAATCTTCAACTGGTTCTGGTTCCGGTTCCACTGAACGCGTGTCCGAAGAACTTCCAGCTGGCGAAGTCTTATTAACCACATCAGTTACAAATGTTCTTGGCACTGTAATTAAATCAGATCCAGCCACTTTTTCATCAGATGGTAGTAGTACACCACAAAAAGTCAAACAACATAGTAGCGATTCAGAATTGCACAGAGGTAGTTCGCATGAAAGTGTCGAAGATGATCCTCCACATCAAATTACAttgCAAGTACCTCAACAACAAGAAATGAATATGTCTCACACAATAGATACATCTGCAATAGAGATACCAGGTTCTTCAACTACAAGTACAGCTCCTCCAACGCATCAAACAATTTCAGGAGGCATACAATGGAATGTGATGGATCAAGGTGGTTATACACACTATACAACATGTTCACCACCCACATCGAtgccaaataataataataatcatccGAATATACCATCACAAtgcaacaatttaaataatcccAATCATCATCATCCTCCACCTCATCCACCATTAAATCCTCCCTCGCCGGCCGACAGTCACTGTTACACAAACCAAATAAACAGTTCACCGCCACAAATGATGCAAAAACGTAAACGTAGTGTAAATCCACAAGCGGATGAGAATTTTATTAGGGCATTGGAGGCGGTGCGTTTCGGTGGGATTGGATTTTGTAAGGCAGCTCGAATGTATGGTGTAAATAATCGCACATTATGGTTGGAATATAAAAAACGTGGTTATCCAAATTTTCgtttaagtattaaaaatcgtaaacaGGAGAATGAATCGAATCAATCGGTTAGTTcaacaccaccaccgccaacatcatcatcatcactaccaccaccacctccaccaCCGCCACCCCAACCACAACAGCAATCTtctcaacaacaacagcagcagcagcagcaacaacaacaacaacaacaacagcattCGGAGCTTGTTAAACAGGATTGTGAACCGATTTTGTGTGCCACATCAAATCATCCGGTTGCATTAATAAGTGGCACATTTTTTGATGGTAAACCAGTTGATTTAGGGCCAGTATTACAACGACCGAAATATTTAGATGCTGCTATTATAAATGCACAACAAGCTATCAATTTTCAAGGTATCAATTATGAACATATGTaa
- Protein Sequence
- MTMQQYCLRWNNHQPNFISVFSSLLNSESLVDVTLAAEGRHLQAHKVVLSACSSYFQSLFTVNPCQHPIVILKDVKFADLKVMVDFMYYGEVNVSQEQLPYILKTAEMLKIKGLAEMPVDQSITKQNSSADRAELLTPGDSNWSSDGVPRQSLSPSPCPLSPTSKRKRLRKSSTGSGSGSTERVSEELPAGEVLLTTSVTNVLGTVIKSDPATFSSDGSSTPQKVKQHSSDSELHRGSSHESVEDDPPHQITLQVPQQQEMNMSHTIDTSAIEIPGSSTTSTAPPTHQTISGGIQWNVMDQGGYTHYTTCSPPTSMPNNNNNHPNIPSQCNNLNNPNHHHPPPHPPLNPPSPADSHCYTNQINSSPPQMMQKRKRSVNPQADENFIRALEAVRFGGIGFCKAARMYGVNNRTLWLEYKKRGYPNFRLSIKNRKQENESNQSVSSTPPPPTSSSSLPPPPPPPPPQPQQQSSQQQQQQQQQQQQQQQQHSELVKQDCEPILCATSNHPVALISGTFFDGKPVDLGPVLQRPKYLDAAIINAQQAINFQGINYEHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121826;
- 90% Identity
- iTF_01121826;
- 80% Identity
- iTF_01121826;