Osur009967.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- bab1
- Assembly
- GCA_004796505.1
- Location
- SSSI01010447.1:77912-84049[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-11 9.1e-09 34.9 0.0 1 39 356 395 356 399 0.90 2 4 1.5e-12 7.5e-10 38.4 0.1 1 39 410 448 410 451 0.95 3 4 9e-19 4.6e-16 58.3 0.0 1 45 465 510 465 510 0.98 4 4 5e-17 2.6e-14 52.7 0.0 1 39 517 556 517 560 0.94
Sequence Information
- Coding Sequence
- ATGTCTGGCCAACATTATTGCCTACGATGGAACAATTATCAAACAAATATGACTTCTGTTTTCCatcaattattacaaaatgagGCATTTGTTGATGTCACATTGGCCTGCAATGATTTATCATTAAAGGCTCATAAGgTCGTTTTGTCGGCGTGTTCATCGTATTTCCAAAAGTTGTTGTTAGAAAATCCATGTAAACATCCAACAATTATAATGCCACAAGATGTATGTTATACTGATTTGAAATTTATCATCGAATTTGTCTATAAAGGTGAAATCGACGTTTCACAAACAGAATTACAGTCACTCTTGCGGACAGCTGaccaattaaaaatcaaaGGTCTTTGTGAATCGccagacaataataataaagaacattttgtaaaatcatCAAGAAAATCTACAACACCGAAACAATTCAAACTACAACAAGATAATAATCGAAAGTACAAATATAAACGTTACAATCATCgtaacaataataaagaaCGTGATAAAGAGACAACAGATGAAGAAAATGACATGCCAGTAGTCTCGGATGAACATAATAAACGGAAACGTTTCGAACCAGAACAAACGAAACCGCTCAACATGACTAGTCATGGCATTATTACAGGCCAAacgATTTTCTCACAATTCGGTGTTGATACGGATGATTTTCCACCGGAACCACCAGCACCTTCAGCCATCCCTGTTGGCCATATGGATATGCAAGATCATTCACCAACACGCACTCTCCTCACCAATACCATCCATCGTACTGATTTATCCGAttccacaaaatatatattagatataaaaaaagaatcggaaataaaatttgaaactttaaGGTCGTCATACGATCAAGAATCGATACTTGAAATCGATTCACGCATGTCATCGGGACCAGAACATTCAATGGATAGCCATGAAGATGGTTACAATATGATGGAATATAATCGAATTATGCCCGGTATATCAAATAGTGGTGATGAAATGGCCAGTATGAAGAATAATGATTGTAATGATGGTGTTCAACATCATTCCAGATCGCATCATCATCCAGGTGGACCGAAAACATGGACACAAGATGACATGGATATGGCTTTGGATGCATTAAGAAATCATAATATGAGTTTAACGAAAGCGTCTGCAACATATGGAATTCCATCCACCACATTATGGCAGCGTGCACATCGATTAGGAATTGATACACCGAAGAAAGAAGGACCCACAAAGTCATGGactgaagaaaatttaaataatgcattGGAAGCTTTAAGAACAGGAACGATATCAGCGAATAAGGCCAGCAAAGCTTTCGgTATTCCTAGTAGTACGTTGTATAAAATTGCGAGAAGAGAAGGTATTCGATTAGCAGCACCATTTAATGCTGCACCAACAACATGGACACCAGAAGATTTAGAAAAAGCATTGGAATCAATCCGAAGTGGACAAACTTCAGTGCAGAAAGCATCAACAGAATTTGGTATACCAACTGGTACGCTTTACGGTCGATGTAAACGTGAAGGTATTGAATTGTCCAGATCGAATCCAACACCATGGTCGGAGGATGCAATGAGTGAAGCATTGGAAGCTGTTAGATTAGGTCATATGTCAATAAATCAAGCCGCAATCCACTACAATTTGCCTTATTCATCACTGTATGGACGTTTTAAACGTGGTATTAAATACGATTCAGATAATATAGATGTGAATCAAGATAGTCAATCCCAAATGGATTCACATACAATTGGTATGGACTATTCAAATTCACATCAACAAATACATTATCAAAATCAAACAAACAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQTNMTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYTDLKFIIEFVYKGEIDVSQTELQSLLRTADQLKIKGLCESPDNNNKEHFVKSSRKSTTPKQFKLQQDNNRKYKYKRYNHRNNNKERDKETTDEENDMPVVSDEHNKRKRFEPEQTKPLNMTSHGIITGQTIFSQFGVDTDDFPPEPPAPSAIPVGHMDMQDHSPTRTLLTNTIHRTDLSDSTKYILDIKKESEIKFETLRSSYDQESILEIDSRMSSGPEHSMDSHEDGYNMMEYNRIMPGISNSGDEMASMKNNDCNDGVQHHSRSHHHPGGPKTWTQDDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMSEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIDVNQDSQSQMDSHTIGMDYSNSHQQIHYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121837;
- 90% Identity
- iTF_01121837;
- 80% Identity
- iTF_01121837;