Obor014847.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902654985.1
- Location
- LR736874.1:2202757-2205995[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0083 0.69 10.5 6.0 1 23 359 381 359 381 0.97 2 8 0.0026 0.22 12.1 1.9 1 23 387 410 387 410 0.98 3 8 1e-05 0.00086 19.6 0.6 1 23 419 442 419 442 0.97 4 8 0.00031 0.026 15.0 3.6 1 23 448 471 448 471 0.98 5 8 0.075 6.3 7.5 5.7 1 23 477 500 477 500 0.93 6 8 0.054 4.5 7.9 0.8 1 23 509 533 509 533 0.91 7 8 0.0019 0.16 12.5 0.8 1 23 539 561 539 561 0.97 8 8 3.1e-05 0.0026 18.1 0.4 2 23 570 592 569 592 0.94
Sequence Information
- Coding Sequence
- ATGGCGGATCTTAAGAATTTTGATGTGCAAAGTAATCGATGGAAATTGGAGGGATCAAACCGGGAGCTAGAGTGTGTTGCCTGCTGTACGGAGGATTCCGTAGAGGCTAGCGCTAACATTAAACAAGAAGCTTGCGTCAAGATTAACAACGATGTGAACGTCGGTAATTTTGTCAATGTTAAACAGGACACCGAAGATCGCACAGCGCAGAATTTGGTGTTCTATAACGAATTGAAGGAGGAATTAGACACCCTCTGCTGCGAGGTGTGTGGAGATGATTACGATTTGTATTGCACAAGATGCCCCATGTTGGTCCGCATCTTCGACGCTAATATACCAAACAAGATTGAGAACAGAATAAAACAGACGTTGCCGAAAGATTTTTTTGATATCCGCGAGATATATCCAGGTGACATAGGCgttattgcattaaaaacgGTACCGCAAGGAGTTACCTTTGGTCCGTTCGAAGGATTGGTTCCTATCATTATAGAGAATACATccaaatggaaaataaacatgGGAAAGTTGGATTATTTGAGGGACCCGCGATGCCTGAACTGGATGCAGTACGTTAGGTATTCTAAGGACTTGCTCTTTCGAAATTTAATGCCATTTCAGTACGAGAACCAATTATTTTATCAGAGTACGCGATTAATCGAAGAAGGAGAAGAATTGTTAGTGTGGTTTGAAGATGGTAATACAAAGGATAACAATTACATCCAACTATcggttattaaagaaaaactagAAGATGTTTACGCTTGTATTTTCTGCTGTTTGGGATTTAATGCGGCTACATTTCTGTTGAAACATAACACTGTGTGTCCGGGGAAGAAGGACAAAAATCTGTCTTTTAAAGAGTCACTGATCATCCAATGCACGTTTTGTAAGATCTATCTATTGGAAAGCGAATATTCAGAAGTCCATTTGGGCCGTTGCTGCACAAGGAAAGCAAAGCTTCTCACGGCACGTTCCAGAATAAACGAGAGTGATCCGGGTCGTCGACGAAACACGTGGAAGAGAAAACGAAACGACCTCGACGACGATGACCTTACTGATAGGGCAAAAAAGTACGACTGCTCGCTGTGCGAGTACGAAACGACGAACAAACATCACTTCATGCGCCATCTGTACACTCATAGCGAGACGAAGCTCTACCGATGCCCGAAATGCCCGTACAGATCGAAGACCAAGTACTACATCGGCGACCACCTCCGTCGGAAGCACGCCGATCGCATTTCGGCGTCCGGCTACGCGTGTCCCCTATGTAGCGAATGTTTCAAGAGAGTCTCGCTGCTACAGATCCACGTCAGAATATCGCATAATGATAACCGCTCGTTTAAATGCCCGAAATGCCAATTTCGAACCTCCAACAAGAAACTTTTCCTCCGCCATTATCGTAGCGCTCACGCCGGCGCTAGGCCGTACCGCTGTCACTCGTGCCCGAAGCGGTTCACGTGCGAGAAGTCGTTGAGATCGCACGTCACCAATCTGCACGTGGACGCGAACCGTACGAAGCGCTTCAAGTGCCCGAAGTGCGACCGCTTCGAGACGAAGTACGAGGCGAGCCTGCGCAAGCATCTGCTGAACGTGCACGGCGGCGTCAAGCGGTTCCGTTGCGGCGAATGCCCGTACGCCACCGCGTATAAACTAAGTCTCGAGCGCCATCTGTGTCTGCATCAGAATGGCGTAACGGTAGAGTGCGAATGCGCCGATTGCGGCGAGAAGTTTGTGACGAGAACGGAACTCGCGGCGCACGTGCGACAACAGCACAAACCGCCGGATAACGTGTACAGGTGA
- Protein Sequence
- MADLKNFDVQSNRWKLEGSNRELECVACCTEDSVEASANIKQEACVKINNDVNVGNFVNVKQDTEDRTAQNLVFYNELKEELDTLCCEVCGDDYDLYCTRCPMLVRIFDANIPNKIENRIKQTLPKDFFDIREIYPGDIGVIALKTVPQGVTFGPFEGLVPIIIENTSKWKINMGKLDYLRDPRCLNWMQYVRYSKDLLFRNLMPFQYENQLFYQSTRLIEEGEELLVWFEDGNTKDNNYIQLSVIKEKLEDVYACIFCCLGFNAATFLLKHNTVCPGKKDKNLSFKESLIIQCTFCKIYLLESEYSEVHLGRCCTRKAKLLTARSRINESDPGRRRNTWKRKRNDLDDDDLTDRAKKYDCSLCEYETTNKHHFMRHLYTHSETKLYRCPKCPYRSKTKYYIGDHLRRKHADRISASGYACPLCSECFKRVSLLQIHVRISHNDNRSFKCPKCQFRTSNKKLFLRHYRSAHAGARPYRCHSCPKRFTCEKSLRSHVTNLHVDANRTKRFKCPKCDRFETKYEASLRKHLLNVHGGVKRFRCGECPYATAYKLSLERHLCLHQNGVTVECECADCGEKFVTRTELAAHVRQQHKPPDNVYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00956632;
- 90% Identity
- iTF_00956632;
- 80% Identity
- -