Obor016085.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902654985.1
- Location
- LR736943.1:343671-381355[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.1 1.8e+02 2.9 1.1 1 23 77 98 77 98 0.91 2 23 0.022 1.8 9.2 0.5 1 23 162 184 162 184 0.98 3 23 0.00053 0.045 14.2 0.4 1 23 190 213 190 213 0.96 4 23 0.092 7.7 7.2 2.2 1 23 257 279 257 279 0.98 5 23 0.36 30 5.3 2.5 3 23 302 321 301 321 0.97 6 23 0.00011 0.009 16.4 1.7 1 23 370 392 370 392 0.97 7 23 0.15 12 6.6 0.2 4 21 401 418 393 421 0.90 8 23 0.03 2.5 8.7 1.6 1 23 462 484 462 484 0.97 9 23 0.0011 0.095 13.2 0.5 1 20 520 539 520 542 0.94 10 23 0.14 12 6.6 2.1 1 23 658 680 658 680 0.96 11 23 0.13 11 6.7 0.9 1 23 686 709 686 709 0.97 12 23 0.19 16 6.2 1.7 2 23 757 778 756 778 0.95 13 23 0.00027 0.022 15.2 1.7 1 23 784 807 784 807 0.97 14 23 1.9 1.6e+02 3.1 1.2 1 23 870 892 870 892 0.86 15 23 0.076 6.4 7.5 1.6 1 23 898 921 898 921 0.93 16 23 9.7 8.2e+02 0.8 3.2 2 23 955 976 954 976 0.84 17 23 0.036 3 8.5 2.5 1 23 982 1005 982 1005 0.97 18 23 0.00026 0.022 15.2 1.0 1 23 1030 1052 1030 1052 0.91 19 23 0.0066 0.55 10.8 4.5 1 23 1058 1081 1058 1081 0.95 20 23 0.024 2 9.1 6.0 2 23 1125 1147 1124 1147 0.96 21 23 0.26 21 5.8 0.7 1 23 1165 1187 1165 1187 0.89 22 23 0.03 2.5 8.8 0.4 1 23 1193 1216 1193 1216 0.94 23 23 0.021 1.8 9.2 0.2 1 23 1236 1258 1236 1258 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAATATTCCAGTGGTAGTTGCAGTATGGACagccaaattttaaaaaccgaACCCGAGGAAGTATATATTAAGGAAGAGGATTATATACCAGAATTTGATCAAAACGTACGTCTTCAAGACACCCTTAATAGTACAAACAATGATAAATCCGAATCAAATGATTCCGATACAGAGAATGagatccaatttaaaattgtcatcGATGATAACAATAAGAAACTATTTGAGTGTGGAATCTGCAAACGATTACTTCGCGAAAGATCTTTCAAGAAGCATTACGCCTTACACAGTGGAGAATTTCCATATCAATGTATGATGTGCAGATGGAAAGCGTTAAATCGTAATACTATTGCCGCACATATGCTGTCTAAGCATCAGATCTTGGTGGACCCCCAGGAGATCCGTAAGATTGTCCCTAAGATAGAGCAGAACGATCCCCGATATACAATTGTTCTTGGAAAAGGAAATAGGAAGTTTTACGAATGTGCGGTTTGCAATCGGCGACTTGCTCTTAAAAGAGGCTTCCAAAATCATTACATGATGCATACGGGCTATTATCCTTACGCATGTACGATCTGTGGTCGTAAAACTCGAGATACCTTCCTCATGATCAGGCATATGTTGATACAGCATCGAATGATAGTGCGCTCTAGCGATATTGTGAAATGCGATAATGAAAATAGAAAAGATAACCAAGGAACTCGTAGGAATCACTTcggtaaaaaagtttgtaaagtattaaattgtggaaataggaaattttacaaatgtactCTCTGCAATACAAGGCTGAATACGATGGATAGatttaatgaacattttcgCATACATTCTCATCTTAAGAACAAGTCACAGCTTATgagaaatgaaagtaaatacaaaaagacACAGGTGCTATGCAAGATTTGCGGACAAGATATCTCTAAACATACCTTCAAGAAACATATGATTAACCATTCGACAGTGAGTAAGACATATCACTGCTGCATCTGCgggtgtaaaaataaaacaaaaaacgtaCTGGATCGTCATTTTCAAAAACAGCATCGAAAGGATTTGTCTCTAAAGGGGAGgaaagttaatataaaagaagttcagcattatatttgcaaattctgCAATATTCCATTCTCGCACTGGGCTCTATTCAAGCAACATATGTTCGTCCATAGCTGTACTAAGAAGCGCAAACGTCCTGGTTGTGATAAATCAACCGCTAAGGAGGATGAGTTGAAAGAACATATCAATCCAGTGCACGCAAATGAATCTACTAGTACTCAACCTAAACTCGAGATTTTGTTTGTGGATACGAATGTGAAagACCACATAAAGGAGGAACTGGTTAAACGGAAACCTAAAAAGGACAAAAGGACACGCTTCAACTGCAAATTTTGCCCCTTCACTGCTAACACTAAGTCACCGTATAGGACTCATTTGAAAATACACAGAATAGACGGCAACAACGCCAAAGGTTGTTATACAGCTGCTCTGAAGGAAGAGGAAAAAGAGTCCGTACATTATACGGCTATCTTGGATGGTGAAGTAAGGGCTTATAAGTGCACAATTTGCGGTAAAACCACCAAGGAGAGATACCTCATCCGGAGACACGTCTGGGTGCATACGGGACAGTTTCCTATGACCTGCGTTTTATGCAAAGCGAAAATTCGACTGAAAAAATCGATGAAGTTCCATCTGAAAAAGGAACACAACCTCGATGTCCGCCTTCGGGATATAGAGAGCGATGGAAGATTAAAAGTAGACATCAAaGAGTTCCAGAGAAAATCTGTGGAAAATAATCACCCGAAAGTTAAGCTGGAAAAATTAGATACAAGTATCGTTACTGCAGAATGTCCGAATCCCATTAAAGATAAGCTGTCTGAATCTAATGAGCCCACCTCAATTGATAATAGGAAAAAACTTCCAACAGGTGATGATCGGTACATCACGGTCAAGAACGGAAGATTCTTCCAATGCGTTATTTGCCATAAGAATTGGAAAACGAAAGGCGGATTTAACACGCATTTTGCCAGCCACACGGGAAAATTACCTTACTCTTGCGAGATATGCGGTCACAAGGGTGGAACCAAGAAGATCATCAAGAATCACATGAGGAGGGCGCATAAGGTACACATAAGCACGCATGATATACCCGACATGGTATCCGAACCGGAATCGGAAGGAGAAGACGTCACCGCGAATTCTATGATAGAGATTGTGGGAGTCCCCTATACGACAATTGAGAGTAACTCAGCAGTATTAGTAAAATGCAAAGTCTGCAACAGGATATTGGATAATAAACATCAATTTGGATGGCATTTTAAAGGACACAAGAAGGAATTTCCGTTCTCTTGCGATATATGCCCTTACAGGAGTAGGGATGAGAGTTATCTGAAATTGCATATGGAAACCTGCCACCCTGTCGAGATGCACGCCTTAGGGAACTCGAATCATAGTAAAGGATCAAAagCTTATCCCAGCGCTGGTAACGGGATTACAGCAAGAAGTTTACGTTTACAAGAAAACACTAAAAGCAGTCCGCATGCAGTTATAGAAATCGAAGGGGACGGATGCATTCTAACTGAGACTAATAATGGCGTGATATATAAATGCTTGCTATGCAAGAAAGAGGTTAAAAACcgatatatatttaatttacacttCGTAGTTCATAAGGGCGAATTCCCATATTCCTGCAAGGAATGTCTCTACCGAACTAGAGAGAAATCCTACATGAAGCAGCATTTGGAGGCTCGCCACAATGTGGAAAtcgaattagaaaatattgaagaagagAATTTCGATAATAATGAATCATCGAGatacATAGTGGTGCGTAGCGGTACCCGAAGGCTTTTAAAATGTCGAATTTGTGGCGATCTAAAGTCGAGGCGATACCATTTCAACAAGCACTACCTTCTCCATACGCAAGATGCCCTATACTCGTGTAACTCCTGCGATTACAAATCAACCGAAAAGAGATTCTTGAAGCAGCACTTGCAGATTAAGCACAACATTATAGTTGAAACGAAAGATATATTACTGGAAGGTGAAGTGGCAATCGATCCGTTAAGgaCCGAGAAGTTCCCGTGCATTCTCTGCGGAAAAAGCTTCAATACCCAATACCAGTTCAACAAACATAACTTGATTCATTCGGACAATCGACCTTACGCTTGTCCCCATTGTACGTACAAAAGTAAGAGCAAATACCTCTTAAAGACGCATCTCTTCAGAAGACATAAAATTCGTTTGGGCGTTGCCGATATCCATCCAACGAAGCCATCCATCGAGCCCGAGGTTATCGTGAAACAAGAATTCCAAGTCTCTGATCCGAATACAATCCAAACACAAGCATCGTCGAAAATGCTTAAATGCGAAAGCTGCCATTTTACGTGCTCTGTTTCTTCGACACTTACCAAACATAGGAAAAGGGCTCATAACATcGGAGGCCTTAATTATACTCTCACAAGAATAGGGACGCAAAGAAACTACACGTGCGTAGTTTGTGGTGAAGTTTATCATACACGACCGACTTTCGATGAGCATTTTACTGCACACATTGAAGAGTTACCTTATTCGTGCCCCCTATGCCACTTCCGATCCGCAAACAGTCCGGAAGTCAGAAAACACATCGAGGGCTCTCATAAGGGCATCCAAAGATCGTTAGGAAATGAATTGGTTCCCGTAATAAATCAGAAAAGTTACAAATGCGAACAGTGTCCTTATATCTCTGTAACTAAAGAGGAGTTCTTGGAACATGAAGAATCTCATTTGGTggACGATAAAAGTACTATTAATGCTTGCACGTTGGAAAGTCCAGAATATGTCACTATAAAAGAAGAATTGCCCGATAATTATAACAATGTGAGCATTTGA
- Protein Sequence
- MEEYSSGSCSMDSQILKTEPEEVYIKEEDYIPEFDQNVRLQDTLNSTNNDKSESNDSDTENEIQFKIVIDDNNKKLFECGICKRLLRERSFKKHYALHSGEFPYQCMMCRWKALNRNTIAAHMLSKHQILVDPQEIRKIVPKIEQNDPRYTIVLGKGNRKFYECAVCNRRLALKRGFQNHYMMHTGYYPYACTICGRKTRDTFLMIRHMLIQHRMIVRSSDIVKCDNENRKDNQGTRRNHFGKKVCKVLNCGNRKFYKCTLCNTRLNTMDRFNEHFRIHSHLKNKSQLMRNESKYKKTQVLCKICGQDISKHTFKKHMINHSTVSKTYHCCICGCKNKTKNVLDRHFQKQHRKDLSLKGRKVNIKEVQHYICKFCNIPFSHWALFKQHMFVHSCTKKRKRPGCDKSTAKEDELKEHINPVHANESTSTQPKLEILFVDTNVKDHIKEELVKRKPKKDKRTRFNCKFCPFTANTKSPYRTHLKIHRIDGNNAKGCYTAALKEEEKESVHYTAILDGEVRAYKCTICGKTTKERYLIRRHVWVHTGQFPMTCVLCKAKIRLKKSMKFHLKKEHNLDVRLRDIESDGRLKVDIKEFQRKSVENNHPKVKLEKLDTSIVTAECPNPIKDKLSESNEPTSIDNRKKLPTGDDRYITVKNGRFFQCVICHKNWKTKGGFNTHFASHTGKLPYSCEICGHKGGTKKIIKNHMRRAHKVHISTHDIPDMVSEPESEGEDVTANSMIEIVGVPYTTIESNSAVLVKCKVCNRILDNKHQFGWHFKGHKKEFPFSCDICPYRSRDESYLKLHMETCHPVEMHALGNSNHSKGSKAYPSAGNGITARSLRLQENTKSSPHAVIEIEGDGCILTETNNGVIYKCLLCKKEVKNRYIFNLHFVVHKGEFPYSCKECLYRTREKSYMKQHLEARHNVEIELENIEEENFDNNESSRYIVVRSGTRRLLKCRICGDLKSRRYHFNKHYLLHTQDALYSCNSCDYKSTEKRFLKQHLQIKHNIIVETKDILLEGEVAIDPLRTEKFPCILCGKSFNTQYQFNKHNLIHSDNRPYACPHCTYKSKSKYLLKTHLFRRHKIRLGVADIHPTKPSIEPEVIVKQEFQVSDPNTIQTQASSKMLKCESCHFTCSVSSTLTKHRKRAHNIGGLNYTLTRIGTQRNYTCVVCGEVYHTRPTFDEHFTAHIEELPYSCPLCHFRSANSPEVRKHIEGSHKGIQRSLGNELVPVINQKSYKCEQCPYISVTKEEFLEHEESHLVDDKSTINACTLESPEYVTIKEELPDNYNNVSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00956610;
- 90% Identity
- iTF_00956610;
- 80% Identity
- -