Obor001276.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902654985.1
- Location
- LR736878.1:5771792-5777079[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.66 56 4.5 2.9 3 23 109 130 107 130 0.94 2 10 2.1 1.7e+02 3.0 0.5 2 23 142 164 141 164 0.87 3 10 0.00076 0.064 13.8 0.2 1 20 316 335 316 339 0.93 4 10 1.8 1.5e+02 3.2 0.8 1 17 346 362 346 369 0.70 5 10 2.1e-05 0.0017 18.7 1.9 1 23 375 397 375 397 0.98 6 10 7.7e-05 0.0065 16.9 0.2 1 23 407 430 407 430 0.90 7 10 3.6e-05 0.0031 17.9 1.9 1 23 436 458 436 458 0.95 8 10 0.11 9 7.0 2.6 1 23 464 486 464 486 0.97 9 10 0.00041 0.034 14.6 5.2 1 23 492 515 492 515 0.98 10 10 0.0005 0.042 14.3 0.6 1 23 524 547 524 547 0.98
Sequence Information
- Coding Sequence
- ATGGTCAGTGATCAAACAATTAACATAAAAACGGATCGTAATCCAACCAACGCGGGAAATGTATGGACAACTAATTCTGATCTTCCCCAATTAACACATGATgaatGTTCAATTTTATCACATCTTGAACCATCTGATAAGGGCCTTCCGAGTAACTTAGAAGTGTCCCAAAATATGGAGTTCATAGTATTTCCAAATACGGATTATAAGTTAACTATTCCTCTCAATTCAGTAgctaaaagtaataatacaaaaaatccaaacagaaaaattatacaggaggatataaaaccaaaaacatGCCATGACctcaattatattttctgtgATCTGTGTCCTTTCTTCTGCACAAGTGAAAAAAGGCTTACCGACCACATTCACAATGTTCATGAAAATGGTAAtacaattaagttaataaagCTAAAGTGCCCAGCTTGTATCAacatattttaccataaaatatCATTACGCTCACATTTGGTAAATGATCATTTAGTAACTAAccctgatttaaataaaataatggggatgatattgaaaaaaagagaaacaaataaaatagatctCAACAAAAATAATCCAAGATCGAATAACATTGGCATCAATTGCAAGAATGAATTTGACTTGAAATATGGTGATAAATTGTGTAAACTCTCCAGTGAAAAAATTCTTAATGAAGAGAAAGTGCAACATACCAGCGAAATGCTTTCAAATGGTATTTTATCATGTGAAATAAGTGATACATcagtaattgtaaatttaccAACTGTAGAAATAACACCTAATAACAcagaaaaaatgttcaatagctatattaaaaaacataattccCTTACtaaattttttgacaaaaaaatgcaaaaatgtactATACCTCAATGTAAAGTTAAActgcaaaatatggaaaaattgaacTATCATCTTAAATGTCATGTGGATGCTAGCTTTAAATGCCCCGAATGTAACGAAGCATTTTCATTTTGGAAGCCTCTAACAGGTCACTTATGGAGATTGCACAAAATTGATATGGAGCTGTATGCTTGTGATAAATGTGAATACAAAACATTTAGTTTGGGCCACTTGAACAATGTTCATAAGTTGATTCATAGCGATACAAAATCTTTTGTATGCAATATTTGCCTGAGAGGgtttaaaaattctaaacaattaaGAAATCATAAGTCTACTCATAAGCGGAAAACtgaaaaaacttcaaattttatttgcgaaGTTTGCTTGAAGTCATTTTCAGATAGAAGACAACTGCGCATACACACGGACGGTGTGCACAAGAAAATTAAACcgtttttatgcaatttttgtgGATACAAAGGTTCAACTAAAAGTTCCTTGAGAATGCATATGCGACAACATACAGgaGAGAAACCGTTTTCATGTGATTCTTGCTCTTATGCTACAGCTGATCATAACTCAATGAGACGCCATAAGTTACGCCACACTGGGGAGAAGCCATATAAGTGCGTGCATTGTGACTATGCTTGTATTCAAAGCAGTACTTACAAGGTccatttgaaaacaaaacatcCAGGATTAGAAAAAGATCTATTATATTCATGTCCTGACTGCACTTTTAGGTCCATAAATAAAGACATGTTTAATACACATTTACTAACagttcataaattaaaaactagttaa
- Protein Sequence
- MVSDQTINIKTDRNPTNAGNVWTTNSDLPQLTHDECSILSHLEPSDKGLPSNLEVSQNMEFIVFPNTDYKLTIPLNSVAKSNNTKNPNRKIIQEDIKPKTCHDLNYIFCDLCPFFCTSEKRLTDHIHNVHENGNTIKLIKLKCPACINIFYHKISLRSHLVNDHLVTNPDLNKIMGMILKKRETNKIDLNKNNPRSNNIGINCKNEFDLKYGDKLCKLSSEKILNEEKVQHTSEMLSNGILSCEISDTSVIVNLPTVEITPNNTEKMFNSYIKKHNSLTKFFDKKMQKCTIPQCKVKLQNMEKLNYHLKCHVDASFKCPECNEAFSFWKPLTGHLWRLHKIDMELYACDKCEYKTFSLGHLNNVHKLIHSDTKSFVCNICLRGFKNSKQLRNHKSTHKRKTEKTSNFICEVCLKSFSDRRQLRIHTDGVHKKIKPFLCNFCGYKGSTKSSLRMHMRQHTGEKPFSCDSCSYATADHNSMRRHKLRHTGEKPYKCVHCDYACIQSSTYKVHLKTKHPGLEKDLLYSCPDCTFRSINKDMFNTHLLTVHKLKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00956613;
- 90% Identity
- iTF_00956613;
- 80% Identity
- -