Basic Information

Insect: Oryctes borbonicus
Gene Symbol: prdm10
Assembly: GCA_902654985.1
Location: LR736864.1:952356-955367[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.002 0.16 12.5 1.8 2 23 232 254 231 254 0.96

2 11 0.0058 0.49 11.0 1.0 1 23 349 371 349 371 0.97

3 11 0.00018 0.015 15.8 1.3 1 23 375 398 375 398 0.95

4 11 0.00023 0.02 15.4 0.5 2 23 404 426 403 426 0.94

5 11 3.7 3.1e+02 2.2 3.0 2 19 431 448 431 451 0.83

6 11 2.4e-05 0.002 18.5 2.0 1 23 461 483 461 483 0.98

7 11 9.9e-06 0.00083 19.7 0.9 1 23 497 519 497 519 0.98

8 11 1.1e-05 0.00089 19.6 1.2 1 23 524 547 524 547 0.94

9 11 1.1e-06 9e-05 22.7 2.5 1 23 552 574 552 574 0.97

10 11 0.0021 0.18 12.4 1.6 2 23 581 603 580 603 0.94

11 11 0.012 0.98 10.0 1.8 1 23 625 648 625 648 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.002	0.16	12.5	1.8	2	23	232	254	231	254	0.96
2	11	0.0058	0.49	11.0	1.0	1	23	349	371	349	371	0.97
3	11	0.00018	0.015	15.8	1.3	1	23	375	398	375	398	0.95
4	11	0.00023	0.02	15.4	0.5	2	23	404	426	403	426	0.94
5	11	3.7	3.1e+02	2.2	3.0	2	19	431	448	431	451	0.83
6	11	2.4e-05	0.002	18.5	2.0	1	23	461	483	461	483	0.98
7	11	9.9e-06	0.00083	19.7	0.9	1	23	497	519	497	519	0.98
8	11	1.1e-05	0.00089	19.6	1.2	1	23	524	547	524	547	0.94
9	11	1.1e-06	9e-05	22.7	2.5	1	23	552	574	552	574	0.97
10	11	0.0021	0.18	12.4	1.6	2	23	581	603	580	603	0.94
11	11	0.012	0.98	10.0	1.8	1	23	625	648	625	648	0.97

Sequence Information

Coding Sequence: ATGGATTTAGAATCTGCAGATAAATTAGCAACAATCTGCGGGATTTGTGGAAGTTCACATAAGATTTCAGTTTGTAGCATGATAAAGATGGAAACCCacATGCATGATAGGATTATACTTTCGAAAGCGAGATTAACTTTACCTAGCGTTTTACGTATTGAGAAGATGTCCGAAGGTAGCGACATGATAGTTGCTAATATAGACATTAAACGGGGGTCTCGATTTGGACCATTCGATGCTAAACGATTGTTTACGTTGAATCCAGAAATTTTATTcccgttaaaaatatttactgtcAACGATTACTTTTCCGAGTATTATTTAGATACTAGTAACGAGCATGAATGTAATTGGATGATGTTTGTAGCACCCGCACAGAATTTAACggaacaaaatttaatctgtTACCAAgataatttaaaaatattttttatgtctaTTAGAGATATTACTGCTGGAGAATTCTTGAAAGTATGGTATTCACCATATTATGCTCGGAAAATGAATAAGGAAGTGCTTATGTCAACTAAGGAGATTGAAAAGAATGAATTAGatctgaatatgttattaaaaaaacaacaaaatttgatgGAACGTGAGGTGTGGACATGTAAATTTTGCAACGCTCAAGAGAAAGATGTTACAAAATTTGCCACGCACATCTCTCAACATTATTCGATGCAAGTGAGGAAGACTTGCGAGATTTGCAAGTCTGCTTTTATGACGCATAAgggCTTAAAGAAACACATTAAAATAGTCCATGCAAATAAATCTGTTATATCCATCGACAACCAAAGTGAAAATACTCATTTAACCAAGAAGAGAGGAGATACCAAAGATGCTATGTTAGGAGGCCCCTTGTTGAACGATATGCTTACCGATAGTATGGATAATACAAATTTACTCTTGCAACAGACTGATATCAGCCGTTTCGATATGCATAATGATATTTTACTAGATAAcgataatttgaatttggctGTTGAGAATTTCATACAGGACGATGATAATTTTAACTTCAATATCGATGAGGATAAAGTAGAGCATATCTGCGATATTTGCCTGAAGCCGTTTGCTAAATTAAAGAGATTAGTGCAGCATTTACAGAAACACACTGGGAAGTATACTTGTTCCGAGTGCTTGGTGatatttagcCGAAACGAAAACCTCCAAGCCCACAAATGTAACATACACAAAAAACAACTAGTGAAATGCGTCTTATGCGATAAACAATTCTcacttaaaaaatatctttcccGCCATATACAGGCGGTCCACGAGAGGAAACGAAGTTGCCCGAAATGCAGCAAGACCTACCACAGCGACAAGGAGATCAAGGAACATAATTGCTCGGGAATATCGGAGATTGAGAAGGAAAAATATCCCTGCTTACTTTGTAATAAGACTTTTTATCGTGAAAGTTACATCAAGAAGCATATGAAGTTGCATGCGCCGATCAAGCAGGCAGGAACCGCCAAGGACGAGCTGTACATCTGCGAAATATGTGCGAAGACGTTTCGTACCGGAAGGAATCTTGCTAGGCATAAAAAGACGCATTTTCAAACTTCTTTTGCTTGTGATAAATGCGATAAAAGTTTCACAAGAGTTGATACTTTGAATCATCACGTGACTGTTGAGCATTGTTCGTTTTCGcATCCTTGTACTATCTGTGAGAAGGTCTTCAAATCGAAAAAATACCTCCAGATACACATGACGACGCACACCAAACGGAAAAATGTTCAATGCTCGGCATGCAACcgtaaatttttccaaaaaagcGCTCtggaaaatcattttaaattaaaacatgccGTACAATGTAACAAGTGCGGTGTAGACAACTGCAACCACCTAAAAACTTTGATCGAATGTTACGAGTGTCCCATCTGTCATAAGCTACTCAAACTGCGCAGCTCAACATTGAGGCACATAAAGAATAACCATCCCCATTCCACTATCGATAGCGACAAAATTGAACGTGTCCGACGAATATGGCGGTCGACAACGACAGCTAGTGATAGGTCAAACAATGTTGATGACGAGAACCATGTAGAGGTTGAAGTAGACGATGAAAGATATAGGAATAAAGCTGGGAGTAACATCGATGGTGGAAATGAGAGTTTTAAAGCTGTAAATGTggaattttgtgaagaaaatgagaaaattacgGGGAAGAATGAAACTAATGTCCTAGATTTTAACAATCTGTCTTTGGAATTGGATAGTTCTTTATCCATGAATAACCAAGAAATTTGTTTGTCGATGCCCGAATTAACAGAGATGGATCAGGATGTAACTTTGAGTGATAACGCCTACGTCTTGGAGAATGGAACCATAGTTGAACCCCTTGATTCTGAAAACATAGTcgtttacatttttgataaaaaataa
Protein Sequence: MDLESADKLATICGICGSSHKISVCSMIKMETHMHDRIILSKARLTLPSVLRIEKMSEGSDMIVANIDIKRGSRFGPFDAKRLFTLNPEILFPLKIFTVNDYFSEYYLDTSNEHECNWMMFVAPAQNLTEQNLICYQDNLKIFFMSIRDITAGEFLKVWYSPYYARKMNKEVLMSTKEIEKNELDLNMLLKKQQNLMEREVWTCKFCNAQEKDVTKFATHISQHYSMQVRKTCEICKSAFMTHKGLKKHIKIVHANKSVISIDNQSENTHLTKKRGDTKDAMLGGPLLNDMLTDSMDNTNLLLQQTDISRFDMHNDILLDNDNLNLAVENFIQDDDNFNFNIDEDKVEHICDICLKPFAKLKRLVQHLQKHTGKYTCSECLVIFSRNENLQAHKCNIHKKQLVKCVLCDKQFSLKKYLSRHIQAVHERKRSCPKCSKTYHSDKEIKEHNCSGISEIEKEKYPCLLCNKTFYRESYIKKHMKLHAPIKQAGTAKDELYICEICAKTFRTGRNLARHKKTHFQTSFACDKCDKSFTRVDTLNHHVTVEHCSFSHPCTICEKVFKSKKYLQIHMTTHTKRKNVQCSACNRKFFQKSALENHFKLKHAVQCNKCGVDNCNHLKTLIECYECPICHKLLKLRSSTLRHIKNNHPHSTIDSDKIERVRRIWRSTTTASDRSNNVDDENHVEVEVDDERYRNKAGSNIDGGNESFKAVNVEFCEENEKITGKNETNVLDFNNLSLELDSSLSMNNQEICLSMPELTEMDQDVTLSDNAYVLENGTIVEPLDSENIVVYIFDKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00956571;
90% Identity: iTF_00956571;
80% Identity: -