Obor012924.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902654985.1
- Location
- LR736916.1:40682-43085[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0014 0.12 12.9 0.6 2 23 169 191 168 191 0.96 2 9 4.5e-05 0.0037 17.6 0.3 1 23 232 255 232 255 0.94 3 9 8.8e-05 0.0073 16.7 0.9 1 23 261 283 261 283 0.96 4 9 4.1e-05 0.0034 17.7 3.0 1 23 289 311 289 311 0.96 5 9 5.8e-06 0.00049 20.4 1.2 1 19 317 335 317 337 0.97 6 9 9.2e-05 0.0077 16.6 1.6 1 23 348 370 348 370 0.99 7 9 4.8e-05 0.004 17.5 1.2 1 23 376 398 376 398 0.95 8 9 0.0015 0.13 12.8 1.4 1 23 404 427 404 427 0.97 9 9 6.4e-05 0.0053 17.1 1.6 4 23 427 447 427 447 0.96
Sequence Information
- Coding Sequence
- ATGCCACTAGtccaaaaaaattgcaatatttgcctggagaaagaagaaaatctaagaaatacCGAAGAAAATGACAGAGATGACATCAAATTCTCAgcaaaattatcattttgcATCCCAGAGctgGACTGGGGCTCAAATTCTTACCTCTTATGCCTTAATTGCGCAGAGAAATTGAATCTAATctacaattttagaaaactgTGCTTAAAATCATTCGGACATACTAAGGCGGAAAACAAAGATAGaagattgaatttattttcaaggaATACGCTCGATTTTAGTGacgaagaagtaaataaatcaacatttagTAATGACGAAGATCCTCAGAATAGATTACAGAACTcgctattaaataagaaattcaaaACGAATCCTTTAAGAATCGTCACTCGCAAAATACCAATAACGCATAATAAGAAAGACCCGCAAAAAGTTGCTAATATTAATGACGAAGATGAGATTAAGAAAGATAATTCTAGAAACATAAATGAACTCGTCTGCTTTAATTGCGAGCAACATTTTAACGATAAAGATGTGTTGATTGAACATTTAAACACGGAACATAATAATCATAGAAGTAATACGTTAATATTAAACGTAGAAGAAACGGAAAATACTAGAATAAACCAAGAGATTCCCCATAAATCAAGGAAAAGGGTCTTAAAACGATTAGAGAAGCAAATTTACAAGTGTGGGATTTGTGCAAGGGTCTTCTCGACGAAATACCTTCTCGGTAGACATGTTACAAACGTTCACGCTACAGAGAAACGACATAATTGTGATATTTGCGGACAGAAATTTGCAAGTCCTCTATATTTATCTGCACATAAACGATACCATTCAGgaGATAGGCCTCATATCTGTTTCATTTGTGGAAAAGGCTTCATTACGACAAGCGAATTATATCACCATAGGAAGATTCATGCGAATAAAAGATCTTATAAGTGCGATAAGTGTCCGAAAGCTTTCAATACCTCTTCAGATCTCCACAAACACAATATTTGCGTGCATATAGATCGAAGTGAATGGAAATATGTTTGCACGTACTGTAACAGACGCTTTCCTCTAAAGACAAACATGGATACGCACGTTAAAACGCACACGGGTGAAAAGAATTTCCTCTGCCATCTTTGCGAAAGACGTTTCATTAACAATTCGGTACTTTTGAGACATATAGCGACACATTCTAACGTCCGTTCATTTCAGTGTAGTGCTTGTAGTCAAAcatataaatatcaaaagtCGTTGGACATTCATATGACGAAATCCCATGTTTGCCAGAAGAAATTCTTCGACCAATcgaatttaaatcaacatttaaagACTGCGCATGGTATTTAG
- Protein Sequence
- MPLVQKNCNICLEKEENLRNTEENDRDDIKFSAKLSFCIPELDWGSNSYLLCLNCAEKLNLIYNFRKLCLKSFGHTKAENKDRRLNLFSRNTLDFSDEEVNKSTFSNDEDPQNRLQNSLLNKKFKTNPLRIVTRKIPITHNKKDPQKVANINDEDEIKKDNSRNINELVCFNCEQHFNDKDVLIEHLNTEHNNHRSNTLILNVEETENTRINQEIPHKSRKRVLKRLEKQIYKCGICARVFSTKYLLGRHVTNVHATEKRHNCDICGQKFASPLYLSAHKRYHSGDRPHICFICGKGFITTSELYHHRKIHANKRSYKCDKCPKAFNTSSDLHKHNICVHIDRSEWKYVCTYCNRRFPLKTNMDTHVKTHTGEKNFLCHLCERRFINNSVLLRHIATHSNVRSFQCSACSQTYKYQKSLDIHMTKSHVCQKKFFDQSNLNQHLKTAHGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00956505;
- 90% Identity
- iTF_00956505;
- 80% Identity
- -