Basic Information

Insect: Oryctes borbonicus
Gene Symbol: -
Assembly: GCA_902654985.1
Location: LR736907.1:651240-653472[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.053 4.5 7.9 0.8 2 21 7 27 6 28 0.87

2 12 0.00033 0.028 14.9 3.5 1 23 320 342 320 342 0.99

3 12 0.00021 0.018 15.5 0.9 1 23 355 377 355 377 0.98

4 12 0.036 3.1 8.5 0.5 1 23 408 429 408 429 0.76

5 12 1.7e-06 0.00014 22.1 0.6 1 23 435 457 435 457 0.98

6 12 0.015 1.3 9.6 1.7 1 21 463 483 463 484 0.94

7 12 0.00012 0.01 16.3 2.1 1 23 491 513 491 513 0.98

8 12 2.1e-06 0.00017 21.8 3.0 1 23 519 541 519 541 0.97

9 12 0.00079 0.066 13.7 7.5 1 23 547 569 547 569 0.98

10 12 1.8e-05 0.0015 18.9 0.2 1 23 575 597 575 597 0.98

11 12 9.9e-06 0.00083 19.7 0.2 1 23 601 623 601 623 0.98

12 12 0.00012 0.0099 16.3 0.2 1 23 631 653 631 654 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.053	4.5	7.9	0.8	2	21	7	27	6	28	0.87
2	12	0.00033	0.028	14.9	3.5	1	23	320	342	320	342	0.99
3	12	0.00021	0.018	15.5	0.9	1	23	355	377	355	377	0.98
4	12	0.036	3.1	8.5	0.5	1	23	408	429	408	429	0.76
5	12	1.7e-06	0.00014	22.1	0.6	1	23	435	457	435	457	0.98
6	12	0.015	1.3	9.6	1.7	1	21	463	483	463	484	0.94
7	12	0.00012	0.01	16.3	2.1	1	23	491	513	491	513	0.98
8	12	2.1e-06	0.00017	21.8	3.0	1	23	519	541	519	541	0.97
9	12	0.00079	0.066	13.7	7.5	1	23	547	569	547	569	0.98
10	12	1.8e-05	0.0015	18.9	0.2	1	23	575	597	575	597	0.98
11	12	9.9e-06	0.00083	19.7	0.2	1	23	601	623	601	623	0.98
12	12	0.00012	0.0099	16.3	0.2	1	23	631	653	631	654	0.96

Sequence Information

Coding Sequence: ATGACGTCCAAGACGTTGCAATGTCCGCTGTGCTGTAACGAGGAGTTTACTTCGTACAGTAGTCTAAAATATCATCTCCTAAGCATCATCGACAATCTGACATGTCCAGCTTGCTCCAATCGTTTCGATAAAATACTCGACCTTGCGGAGCATTTAGGTCGGGAGTGCCATGACGGAAACGAAAACGATTCAAATGAACAGCAGCAGATGATAATTAGTACGTTGAACATAAAGACGGAGGATTGCGGCGTCGAGACGGACAACAACAACTACAATAATAGCATTTTGGCACAGGCTCTGCTCAAGAAAGATAACATGACGCCTCAAGAGAAATTCGGAGTCGATAAAAAAAGCGGCGcggcaaaaatgaaaaatccaaATCATCTACAAGATGTAAAAGAACCTAACGTGGGAGACGTTAATGAAAAtgaggaatatttttattgttccagTTGTGCAGTAAGTTTTTCTTCCATAGATGAACATCTTCAACAGTATCATGAAGgccaagaaatatttattgagGATGGTGGTGAAGGTGATGTTGGTAATGAAGAAGGTGACACATTCATCgtagtacaaaataaaattctaggcGAAGTCGATGAAGAGGATGAAGACAGCGAAGACAATTTAATTGACATAACAGATTCAAACGATTACAACACCTTACGACAAGAGGACATAACTGACAAGGATGGTAGATTATACACACGGAAGGTTGTCCAGATTGAAAAATTCTGGGATGAATCTgatgaaaaaaatggaaagccACCTCCTAAAACCCAGAAATACattttggaaaatggaaaagctATAAAAGTGGATGAGAATACCGAGGATGTAGCTGGGAAGCATGTTTCAGTTATACATCAATGTGAGACGTGCCATTTGCAGTTTTGTAAATTAGAACAATATTATACACATTCGTGCGATCCGATGAAGAACTCGCAAGAGTATAAGTGCTTTAAATGTGATGCCACATTCTTTAGTGCCCGTTCGTTATATACACATAGAAAAACACACAAGACAGAAAGTAATCTTGTGGAAATTTCAGGACCTTTCATATGCGAAGTGTGTTCAACGGAATTCCCAACCTATAAATCTTTACGGTTACATAAGAGAATGCACGATCCGattaaagttaaagaaattGAACCTCCTGTGAGTTATGGCTTAACTGGAGAGACTGATCCAGAAAAATGGGGTGTACGCGAGATGTTTGTCTGccaaatatgcaataaaacCTATGATAAACAATATGAGGAGGTGCACATGATATCTCATAGTGACGAACCAAAGTATGACTGTGAAATCTGTAATCGTAAATTTTTCACACAATCTAATCTCGAAATGCATGCCAGAGTCCATTCCAACAGTAAAAAATTTACTTGCTCATACTGTAAGAAGGGCTTCCTGAATTATGAGAGCTTACAAGAACATGTAAAGCATACGTGCCAAAGTAGACCTTACGAATGTCAGTATTGTGGACGTAGATTTATGAGACCACACGAGAAGGTTAAACATGAACGGATACATACTGGTGAAAAGCCTCATATTTGCGAGATCTGTGGTAAAGGCTTTCGAGTCAGCTATTGCTTAACGTTACATATGAGAACTCATTCTGGTACGAGACCTTATCAATGCTCGCATTGCGGTAAACGCTTCAAAGCACACAGCGTCTACAACCACCATCTTCTGACTCATTCAACAGTACGTAACTATAAATGCCCATACTGCCCTAAAGCTTTTAAAACTGGAGTGCAATTAGCTGGACATAAAAACAGTCACATAAAACCTTTCACTTGCACGGAATGTAATCGACCATTTGCTTCGTTGTATGCGGTCAGAGCTCACATGGAAACCCACAAACGAGAAAATAACTTAAAGTATAGTTGCTGGTTATGCGGGGCATCCTATGCAAGAGCATTTGCATTACGGGATCATATAAAGGAGCATCATTCAGGAGTGGCTCCAGATAAACCTGATCCCGAATTATTGGAGCCGCAATATGAGATGGTAGCCGAAGGTGTTAATGCTAGTAATGCTATTTTGAATGAAGGGACTACGAACGATGTGTTAGTTGTATTAGAACAAgacaatattgaaaatgttgaaatggtCGAAGAAATTGCTGCTGTTGAGTGA
Protein Sequence: MTSKTLQCPLCCNEEFTSYSSLKYHLLSIIDNLTCPACSNRFDKILDLAEHLGRECHDGNENDSNEQQQMIISTLNIKTEDCGVETDNNNYNNSILAQALLKKDNMTPQEKFGVDKKSGAAKMKNPNHLQDVKEPNVGDVNENEEYFYCSSCAVSFSSIDEHLQQYHEGQEIFIEDGGEGDVGNEEGDTFIVVQNKILGEVDEEDEDSEDNLIDITDSNDYNTLRQEDITDKDGRLYTRKVVQIEKFWDESDEKNGKPPPKTQKYILENGKAIKVDENTEDVAGKHVSVIHQCETCHLQFCKLEQYYTHSCDPMKNSQEYKCFKCDATFFSARSLYTHRKTHKTESNLVEISGPFICEVCSTEFPTYKSLRLHKRMHDPIKVKEIEPPVSYGLTGETDPEKWGVREMFVCQICNKTYDKQYEEVHMISHSDEPKYDCEICNRKFFTQSNLEMHARVHSNSKKFTCSYCKKGFLNYESLQEHVKHTCQSRPYECQYCGRRFMRPHEKVKHERIHTGEKPHICEICGKGFRVSYCLTLHMRTHSGTRPYQCSHCGKRFKAHSVYNHHLLTHSTVRNYKCPYCPKAFKTGVQLAGHKNSHIKPFTCTECNRPFASLYAVRAHMETHKRENNLKYSCWLCGASYARAFALRDHIKEHHSGVAPDKPDPELLEPQYEMVAEGVNASNAILNEGTTNDVLVVLEQDNIENVEMVEEIAAVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00070632;
90% Identity: iTF_00627597;
80% Identity: -