Obor011267.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oryctes borbonicus
Gene Symbol
-
Assembly
GCA_902654985.1
Location
LR736873.1:4331535-4336503[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00023 0.019 15.4 3.3 1 23 134 156 134 156 0.97
2 14 0.012 0.98 10.0 7.0 1 23 162 184 162 184 0.97
3 14 4.1e-06 0.00035 20.9 0.9 1 23 193 215 193 215 0.97
4 14 0.00019 0.016 15.6 0.5 1 23 254 276 254 276 0.99
5 14 5e-06 0.00042 20.6 6.6 1 23 282 304 282 304 0.97
6 14 0.0016 0.13 12.7 5.0 2 23 325 347 324 347 0.95
7 14 5.2e-05 0.0043 17.4 1.1 1 23 387 410 387 410 0.95
8 14 3.8e-06 0.00032 21.0 0.2 1 23 415 437 415 437 0.98
9 14 1.8e-07 1.5e-05 25.1 0.7 2 23 446 467 445 467 0.97
10 14 3.3e-08 2.7e-06 27.5 1.4 1 23 474 496 474 496 0.98
11 14 3e-05 0.0025 18.2 1.3 3 23 508 528 506 528 0.92
12 14 0.00036 0.03 14.8 5.5 1 23 534 556 534 556 0.99
13 14 8.8e-08 7.3e-06 26.2 0.2 1 23 577 599 577 599 0.98
14 14 0.00012 0.01 16.2 0.1 1 23 605 629 605 629 0.92

Sequence Information

Coding Sequence
ATGATTAATAGTTGCGATAAAATTGTAATGGAAAAACTATGTCGATCATGCATGTGCGAAAGCACGAACCTTAGaaacttatttgaaattaaGGATGCCCTAGAAGATAAATCCTACATTATAGCTGATATGTTTATGGCCTGTACTTCAGTCGAGATTACAAAAGGTGATCCTTTACCAAAAAATATCTGTGCGCAATGTGAACTTAAACTAACAGttgcatttgaatttaaacaacaatGTGAGAAAACTGATGTTTCTCTTCGGAAGTTAGTACAAAATGAAGGCGAAGAAATAGAAGTAAAACCAGAAGTAAACGATtattatgatgatgatgatgataatagGACTATATCGGATTCAGATGATTCTAATGcaagtaaaaatgaaaagaaatcatTTGATTGCAAATTTTGTTCAAAGGGATTTAGATCAAAAAATGGTTATAAATTACACATGCAAAAGcacaataatgaaaaattacatagtTGTCATATATGTcaaggaaaattttcaaaaagcaatttacataaacatttgcaGACTGTGCACAAAACTGATGCAGAATATAACACTCACACTTGTGATGAATGTGGTTTAACTTTTCCTAAGGCTTACTTGTTATCTAGGCATATGAAAGagcataaaaatcaaaatcttagCACCGATATAGTTGAAGAtgacaaaatagaaatatcgGAGTATTTAAAAGATGAATTTTCTAATGAAGAAACTCAGGATAAGTCAGATAAGGATAAATATGAATGTAAATTTTGCAGTAAGGTTCTAGCAACATATGTAGGTTTGAAGATACATCTACGGCGGCATACTGGCAATAACTTACATTCTTGTGGTgtTTGTAAGAAAACTTTTACCAAAAGCAATCACCTCAAGCGACACATGTTAACACATGGGGTTAAAGTTGATGGGACAAAATCTTCTGACAATTGTGATAAGGATAAGAAGATTATGCAATGCGAATTTTGCGATCGAAAGTTCAAATACAAGAAGAGTTTCAGTCAACATATGCACAATGAACATGGAATATCAGATGAGAGTGATGTACCCCTAAGTACATTTGTTGGAAAGAAAGAAGTATCTGAACCTGAAGAAGAGAATGGCGAATCACAGAAAACAGATGAAACTAATGTTTTGACACATAAATGCTACCGTTGCGACAAAGCTTTCGCAACCCCCGAATACCTGGCCAAGCACACGCAAGAGGATCACATCGACAAACCATACACTTGCTCTATATGTGATAAGACGTACGCCAGAGGGGAACAGCTCATCAGGCATTTAAAAGCACATTTAAATCCAACGGAGATCGATATCAAGTGTTCAATATGCGATAAACAATTTACTAGATCTGATCAATTAGCAAAGCATTTAAAAGTACATCTCCAGCAGGATAAGCGACATGTTTGCAACGAATGCGGCAAAGCTTTTAATAggttagataatttaaaaacgcaCCAAAGGATACACACCGGGAAAAAGGAAAGCTCCAAACTAcatctttgtatttattgcggaaaggaatttaataattcgAGTAACATGaTAGTTCACATAAGGAGGCATACCGGAGAAAGACCTTATAAATGCAGTCAATGTGATAAGGGATTCCCCCGTTCGCATGATCTCAAATGTCACGAAAGGACGCACTCGGGAGAAAAACCATATATGTGCACGTTACATACTCGTGTTCATACTGGAGAACGACCCTACGCTTGCAACATATGCGGCAGGGCGTTCACGCAATCGAATGATCTTGCCTTACACATGCGGAGACATACCGGTGCCAGACCGTACGCTTGCGGCATGTGTCCGGCTCGCTTCATCCAATCGGGTCAGCTGAAAGCGCACAGGAGATCCACGGGTCATTGGATGGAAACGCAACCGGACCTGAAAGGCGGTCATCGCGTCGAACCGGTAGTCTCGTTAGCCGAACCCGTGCCTATAAAGTTCAAAACACACGGTAAGAAGAAGGTGGGGGAGGAAACCAAAGAGCAAGAACCTACGGAACCTCAACCGAATCACAATTCGGTCGACGTCGTCATGAAATCGGTTGTCGAAGAGACGAAATTGATTTCACAGTATTCGTCGGGGGAAATGTCAACGTTTAATGCGGGCAGAGAAAACACAAACGAATCAAATGCAAGCATCAAAAGCGAAGTACAATATAATTGCAGCAGTAGTAATATAAATAGTGATAATAAGGAGCAAATCGATCGGCAAAACGATCCGAACAcattccaaatttataatacgAATCCGCCGACGTCAACTTCGTATAATTACAACACGTACCAATCGTTCGGATAG
Protein Sequence
MINSCDKIVMEKLCRSCMCESTNLRNLFEIKDALEDKSYIIADMFMACTSVEITKGDPLPKNICAQCELKLTVAFEFKQQCEKTDVSLRKLVQNEGEEIEVKPEVNDYYDDDDDNRTISDSDDSNASKNEKKSFDCKFCSKGFRSKNGYKLHMQKHNNEKLHSCHICQGKFSKSNLHKHLQTVHKTDAEYNTHTCDECGLTFPKAYLLSRHMKEHKNQNLSTDIVEDDKIEISEYLKDEFSNEETQDKSDKDKYECKFCSKVLATYVGLKIHLRRHTGNNLHSCGVCKKTFTKSNHLKRHMLTHGVKVDGTKSSDNCDKDKKIMQCEFCDRKFKYKKSFSQHMHNEHGISDESDVPLSTFVGKKEVSEPEEENGESQKTDETNVLTHKCYRCDKAFATPEYLAKHTQEDHIDKPYTCSICDKTYARGEQLIRHLKAHLNPTEIDIKCSICDKQFTRSDQLAKHLKVHLQQDKRHVCNECGKAFNRLDNLKTHQRIHTGKKESSKLHLCIYCGKEFNNSSNMIVHIRRHTGERPYKCSQCDKGFPRSHDLKCHERTHSGEKPYMCTLHTRVHTGERPYACNICGRAFTQSNDLALHMRRHTGARPYACGMCPARFIQSGQLKAHRRSTGHWMETQPDLKGGHRVEPVVSLAEPVPIKFKTHGKKKVGEETKEQEPTEPQPNHNSVDVVMKSVVEETKLISQYSSGEMSTFNAGRENTNESNASIKSEVQYNCSSSNINSDNKEQIDRQNDPNTFQIYNTNPPTSTSYNYNTYQSFG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-