Obor004634.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902654985.1
- Location
- LR736870.1:7306644-7310033[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.4e-05 0.0037 17.7 3.3 1 23 183 205 183 205 0.98 2 18 0.0055 0.46 11.1 0.9 7 23 240 256 234 256 0.92 3 18 0.046 3.8 8.2 0.2 5 17 266 278 264 279 0.91 4 18 3e-06 0.00025 21.3 1.2 2 23 291 312 290 312 0.96 5 18 2e-05 0.0016 18.8 3.4 1 23 317 339 317 339 0.98 6 18 2.8e-05 0.0023 18.3 0.6 1 23 345 367 345 367 0.98 7 18 6.7e-06 0.00056 20.2 2.5 2 23 373 394 372 394 0.97 8 18 0.0013 0.11 13.0 1.6 1 23 400 422 400 422 0.98 9 18 7.9e-07 6.7e-05 23.1 4.5 1 23 428 450 428 450 0.97 10 18 3.8e-08 3.2e-06 27.3 2.8 2 23 457 478 456 478 0.97 11 18 0.0001 0.0087 16.5 2.4 1 23 483 505 483 505 0.98 12 18 0.0059 0.5 11.0 1.3 1 23 511 533 511 533 0.97 13 18 1.9e-05 0.0016 18.8 2.9 2 23 539 560 538 560 0.97 14 18 3.3e-07 2.8e-05 24.3 0.5 2 23 567 588 566 588 0.97 15 18 2.2e-07 1.9e-05 24.9 1.4 3 23 596 616 594 616 0.98 16 18 3.2e-06 0.00027 21.2 4.6 2 23 623 644 622 644 0.97 17 18 3.6e-05 0.003 17.9 1.7 1 23 649 671 649 671 0.98 18 18 1.1e-05 0.0009 19.6 3.3 1 23 677 699 677 699 0.99
Sequence Information
- Coding Sequence
- ATGTCAATCGAGATTATACTCGAGGGGCAAAGCGATGACCTTTCAACCGATGCCGTATTTGACTTAGCCGATTGCTGCAGGACATGTTTACGACTTGAATGTTCCTTAACACCGACAAATTCCTTGGATAGTGACTCCATAAAATTTTGTGACAAGTTAGCGGCATGCGTATCAGGAATAaAATGGGCGAAGGAAGGTGTCCCTTCGTTTATTTGTGGGTTATGTATAGAGAAACTAAGAATTGCCTATGATTTCCAAATGGTTTGTTTACAATCAGATCAAGCGCTCCAATTACGAGTTGAAGCAAACATAACGCCGGATCCTACAATAACAAGCAGCTTAGCAGAATGTGACGAAGCAAAGGAGGAAgttattttaactataaaacCTGAAGAAACACAAGTGCAGCTTCCACCTCAGTGCGCCCCGGTTACCCCAGCTATAACACAATTAGAAACTATGCAAATAGTTGATAATCCTTATCTTAACTGTCAGGTTTGCGGAAAAGAATTATGTGAACATATTCGACCGCACATAAGGGAGCCATTTACTTGTAGTTATTGTGATGAAAAATTCAGTAGTAAATGTGTGTTGAACGCCCACTTAAAATCTCATAGTGACGATAAATTTTTGCGACGTCGAATCTATAAGAGATCACATACAAAATTTTCTCACCTTACAGCACATACCAGAGAAGAGTTTTCCTGTAAATTCtatgataaaaaatttaaactatctTCTTCGTTAAATGCACATATGCAAACACATACTGGCGACAAACTTTCACAAAATCAGGACTGTGAGAAATCGTTTACAAAATCTTCTCACCTTACGCaatgtatgaaaaaatataGTGGCGCTAGATGTTGGACATGTAGAACATGTAACAAATCATACACAAGGTCTGATAGTCTTAGGATACATATGAAGGCACATACTGGAGAGAAGTTTTCGTGTAATTTATGCGGTCAGCAATTTAGacatttatatcaattaaaagtCCACAGGCGGGAACACACGGGAAGACAGCCATTTAAGTGCGGTCTCTGCGACCAAGTATGTAATAGTGCCGCACAATTGGAAACGCATATGATAAAACATACTGGCGAGAAATTGACTTGTTCAAAGTGCGATAAAGAGTTTTCTAACAGATATAGGTTGAACTCCCATTTAAAAACTCATCCCGGCGGAAGTACATTCAGTTGCTCCATTTGCGATGGTACTTTTACATGTTCAAGGGACTTAAAGATACATATGAGCGTACACACTGGTGAGAAATCCTTTGACTGTGAACTGTGcggtaaaaaatttaaacattcttcGTCTTTACATGCGCATATAAGAAGACATAGCGGTGTTAGACGTTGGCAATGTCGAATCTGTCACAAATCATTTACAAGGTCTTCTAACCTTACAATACATATGAAGATACATACTGGAGAGAAGTTTTCGTGTAATATATGTGCTCAGGAATTTAGacatttatatcaattaaaagtCCACAGGCGGGAACACACGGGAAAACAACCATTTAAGTGCATCGTCTGCAACAGAATATGCAATAATGGCTCGGAGTTGGAAACGCATATGTTAAAACATACCGGTAAGAAATTGACGTGCTCAACCTGCGATAAACAATTTACTAACAGATATAGGTTGAACTCTCATTTAAAAACTCATACcggtgaaaatatattaaaatgctCCTTTTGTGATCGTACTTTTACTGTTCCAAGCGCCTTAAATACACATATGAGGATACACACTGGCGAGAAACCCTTCGGCTGTGAAGTTTGCGGTAAAAAGTTTACACACAATTCCTCTTTAATTATGCATATGAGAATACATACTGGCGATAGACCTTGGCGATGTCGAATATGTAACCAATCATTTACGCAATCTTGTAGTCTTACAAGACATATGAAGACACATACCGGGGAGAAGTTTTCGTGCAAATTATGCGGTCAGGAATTTAGATATTATCGTCAATTATCAGTCCACAGACGAGTACACACGGGAAAACAACCGTATAAGTGCAATCTTTGCGACAAAGTATGCAATTATCCTTTTCAGTTGAAATCGCATATGATAAAACATAATAGTGGGAAATTGACTTGTTAA
- Protein Sequence
- MSIEIILEGQSDDLSTDAVFDLADCCRTCLRLECSLTPTNSLDSDSIKFCDKLAACVSGIKWAKEGVPSFICGLCIEKLRIAYDFQMVCLQSDQALQLRVEANITPDPTITSSLAECDEAKEEVILTIKPEETQVQLPPQCAPVTPAITQLETMQIVDNPYLNCQVCGKELCEHIRPHIREPFTCSYCDEKFSSKCVLNAHLKSHSDDKFLRRRIYKRSHTKFSHLTAHTREEFSCKFYDKKFKLSSSLNAHMQTHTGDKLSQNQDCEKSFTKSSHLTQCMKKYSGARCWTCRTCNKSYTRSDSLRIHMKAHTGEKFSCNLCGQQFRHLYQLKVHRREHTGRQPFKCGLCDQVCNSAAQLETHMIKHTGEKLTCSKCDKEFSNRYRLNSHLKTHPGGSTFSCSICDGTFTCSRDLKIHMSVHTGEKSFDCELCGKKFKHSSSLHAHIRRHSGVRRWQCRICHKSFTRSSNLTIHMKIHTGEKFSCNICAQEFRHLYQLKVHRREHTGKQPFKCIVCNRICNNGSELETHMLKHTGKKLTCSTCDKQFTNRYRLNSHLKTHTGENILKCSFCDRTFTVPSALNTHMRIHTGEKPFGCEVCGKKFTHNSSLIMHMRIHTGDRPWRCRICNQSFTQSCSLTRHMKTHTGEKFSCKLCGQEFRYYRQLSVHRRVHTGKQPYKCNLCDKVCNYPFQLKSHMIKHNSGKLTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00956484;
- 90% Identity
- -
- 80% Identity
- -