Basic Information

Insect: Oryctes borbonicus
Gene Symbol: -
Assembly: GCA_902654985.1
Location: LR736870.1:8789789-8792611[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0002 0.017 15.6 4.6 3 23 192 212 190 212 0.98

2 15 1.2e-07 9.8e-06 25.8 1.8 2 23 219 240 218 240 0.97

3 15 7.3e-06 0.00061 20.1 1.4 1 23 245 267 245 267 0.98

4 15 8.5e-05 0.0071 16.7 2.2 2 23 284 305 283 305 0.97

5 15 2.4e-07 2e-05 24.8 1.7 2 23 312 333 311 333 0.97

6 15 0.0012 0.1 13.1 0.4 2 23 339 360 338 360 0.97

7 15 1.6e-06 0.00013 22.2 1.0 2 23 366 387 365 387 0.96

8 15 2.8e-05 0.0023 18.3 3.8 1 23 392 414 392 414 0.98

9 15 6.8e-08 5.7e-06 26.5 1.7 2 23 421 442 420 442 0.97

10 15 4.5e-05 0.0038 17.6 1.1 1 23 447 469 447 469 0.98

11 15 6.1e-06 0.00051 20.3 2.1 1 23 475 497 475 497 0.98

12 15 2.2e-07 1.8e-05 24.9 1.4 2 23 503 524 502 524 0.97

13 15 8.9e-09 7.5e-07 29.3 2.4 1 23 530 552 530 552 0.99

14 15 1.3e-08 1.1e-06 28.7 1.3 1 23 558 580 558 580 0.99

15 15 2.2e-05 0.0019 18.6 5.5 1 23 585 608 585 608 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0002	0.017	15.6	4.6	3	23	192	212	190	212	0.98
2	15	1.2e-07	9.8e-06	25.8	1.8	2	23	219	240	218	240	0.97
3	15	7.3e-06	0.00061	20.1	1.4	1	23	245	267	245	267	0.98
4	15	8.5e-05	0.0071	16.7	2.2	2	23	284	305	283	305	0.97
5	15	2.4e-07	2e-05	24.8	1.7	2	23	312	333	311	333	0.97
6	15	0.0012	0.1	13.1	0.4	2	23	339	360	338	360	0.97
7	15	1.6e-06	0.00013	22.2	1.0	2	23	366	387	365	387	0.96
8	15	2.8e-05	0.0023	18.3	3.8	1	23	392	414	392	414	0.98
9	15	6.8e-08	5.7e-06	26.5	1.7	2	23	421	442	420	442	0.97
10	15	4.5e-05	0.0038	17.6	1.1	1	23	447	469	447	469	0.98
11	15	6.1e-06	0.00051	20.3	2.1	1	23	475	497	475	497	0.98
12	15	2.2e-07	1.8e-05	24.9	1.4	2	23	503	524	502	524	0.97
13	15	8.9e-09	7.5e-07	29.3	2.4	1	23	530	552	530	552	0.99
14	15	1.3e-08	1.1e-06	28.7	1.3	1	23	558	580	558	580	0.99
15	15	2.2e-05	0.0019	18.6	5.5	1	23	585	608	585	608	0.97

Sequence Information

Coding Sequence: ATgtcaattgaaattatatttgaggAGGAAACCAATCTTAATGACCCTTCAATCGATACCATATTTGATTTAAGTGATTGCTGTAGAACATGTTTAGGGCATGAATGTTCCTTGACGCCAACGAATTCTTCGGATAGCGACTCTATAAAATTCTGCGACAAATTAGCGGCCTGCGTGTCAGGAATGATGTGGGCCAAGGAGTGTGTGCCTTCTTTTATTTGTGGAATGTGTatagaaaaactaagaattgCCTATGATTTCCAAACGGTTTGTTTACAATCAGATCAAACACTTCAGTCACAAGTGGAGGCAAAACAAGTACAAAGTTCTATACGTACAACTCCAGATCCTACAACAACAACTGGCTTACTAGGATGTGATGAACCAACAGACAAAATTATGTTAAGTATAAAATCCGAGGAAACACAAGTGCAGTCTTTACCTCATTGTGACCCAACCACTTCAGCTACAGCACAATTAGAAGCTACGCAGACATTAGATAAGCCTTGTAAAAGTTGCTGCCAGATTTGCGGAAAGGAATTATGTGAACATACAGGAGAGAAACAATTTGGATGTAGTTATTGTGATAAAAAATTTAGTAGAAAATGTTTCTTGAGCTCCCACTTAAAAATTCATGTTGGCAATAAACTTTTACAATGTCGAATCTGTAacaaatcatttacaaaatcTTCTCAGCTTACAGCGCATCTGAAGACACATAGTGAAGGGAAGTTTCCCTGTAAATTATGCGACAAAAAGTTTATATGGTCTTCTTCTTTAAGTAAACATATGAGAAGGCATGGCGTTAAACTTACAGAAGACATGAATACATATACTAAGAGGAAGTTATCCTGTAAATTATGCGGTAAAAGGTTTAGATGGTCAACTTCTTTCAAGGCACATATGAAAAGACATAATGGCGATAAACGTTGGTCATGTCAAATTTGTAACAAATCATATACACAATCTCCTCACCTTATACAGCATATGAGGACACATACAGGAGACAAGCTATCCTGTAAAATATGCAATGTTAAGTTTATATGGTCTTCCTCTTTAGATGCACATATGAAGAAACATACTGGCGATCAACTCCAATGTAAAATCTGTAACAAATCGTATGTATATTCTTATCAACTTAGAAACCACATGATACAACATACTGGAGAGAAGTTTTCCTGTAAAATATGTGGTCAAACTTATAAATGTTCTTCCTCATTACAAGCACATATGAAAAAACATACTCCCGATCAACTTTGGACGTGTAAAATCTGTAACAAATCATTTTCGTATTCTTATGGACTGAGGAACCACATGAAGACACATACTGGAGAGAAGTTCTCTTGTAAATTATGTGGTGAGGAATTTGGATATTATTCTCATTTAATAATCCATAGGCGAGGACACACGGGAAAGCAACCGTATAAGTGTACTGTctgtaacaaaatatgcaactattCCTCAGAATTGCAAGCACATATGGTGAAACATACCGGTGAAAAATTAACTTGTTCAATATGTGACAAACAGTTTACTACCAGTTATAAGTTGAACCGCCACATAAAAATTCATACTGgggaaaatatattcaagtgCTCGATTTGTAATCGTACGTTTACAGAATCGGGCAACTTAAAGAAGCATATGAGGACGCACACTGGCGAGAAACCCTTTCGCTGTAAAGATTGTGGTAAAGACTTTAGAGATTCTGGCTACCTTAAGACGCACATGAGAATACATAGTGGAGAAAAGTTTTCCtgtaaattatgcaataaaagATGCTTTACACGATCTTCTGATTTAAAAGCGCATATGAGAAAACATGCCGAGGAAGCTCCTTAA
Protein Sequence: MSIEIIFEEETNLNDPSIDTIFDLSDCCRTCLGHECSLTPTNSSDSDSIKFCDKLAACVSGMMWAKECVPSFICGMCIEKLRIAYDFQTVCLQSDQTLQSQVEAKQVQSSIRTTPDPTTTTGLLGCDEPTDKIMLSIKSEETQVQSLPHCDPTTSATAQLEATQTLDKPCKSCCQICGKELCEHTGEKQFGCSYCDKKFSRKCFLSSHLKIHVGNKLLQCRICNKSFTKSSQLTAHLKTHSEGKFPCKLCDKKFIWSSSLSKHMRRHGVKLTEDMNTYTKRKLSCKLCGKRFRWSTSFKAHMKRHNGDKRWSCQICNKSYTQSPHLIQHMRTHTGDKLSCKICNVKFIWSSSLDAHMKKHTGDQLQCKICNKSYVYSYQLRNHMIQHTGEKFSCKICGQTYKCSSSLQAHMKKHTPDQLWTCKICNKSFSYSYGLRNHMKTHTGEKFSCKLCGEEFGYYSHLIIHRRGHTGKQPYKCTVCNKICNYSSELQAHMVKHTGEKLTCSICDKQFTTSYKLNRHIKIHTGENIFKCSICNRTFTESGNLKKHMRTHTGEKPFRCKDCGKDFRDSGYLKTHMRIHSGEKFSCKLCNKRCFTRSSDLKAHMRKHAEEAP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00956455;
90% Identity: iTF_00956455;
80% Identity: -