Obor001872.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oryctes borbonicus
Gene Symbol
ZNF236
Assembly
GCA_902654985.1
Location
LR736858.1:19440160-19471264[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0017 0.14 12.7 0.6 2 23 113 134 112 134 0.96
2 25 0.0062 0.52 10.9 1.7 1 23 140 162 140 162 0.97
3 25 0.00076 0.064 13.8 0.8 2 23 168 189 168 189 0.97
4 25 0.0039 0.33 11.5 1.4 1 23 195 217 195 217 0.98
5 25 0.008 0.67 10.5 0.7 1 23 230 252 230 252 0.96
6 25 2.4e-05 0.002 18.5 5.3 1 23 277 299 277 299 0.98
7 25 1.5e-06 0.00013 22.2 0.2 1 23 305 327 305 327 0.96
8 25 0.0024 0.2 12.2 0.7 1 23 333 356 333 356 0.96
9 25 0.008 0.67 10.5 2.7 1 23 366 389 366 389 0.97
10 25 9.4e-07 7.9e-05 22.9 0.4 1 23 478 500 478 500 0.98
11 25 3.8e-05 0.0032 17.8 3.4 1 23 506 528 506 528 0.99
12 25 0.0076 0.63 10.6 4.8 1 23 534 556 534 556 0.99
13 25 0.0043 0.36 11.4 0.6 1 23 567 589 567 589 0.98
14 25 0.00022 0.019 15.4 3.2 1 23 644 666 644 666 0.99
15 25 1e-05 0.00087 19.6 1.7 1 23 672 694 672 694 0.98
16 25 6.4e-05 0.0053 17.1 0.9 1 23 700 722 700 722 0.98
17 25 0.0035 0.29 11.7 3.0 1 23 728 750 728 750 0.98
18 25 4.4 3.7e+02 1.9 0.5 2 20 1087 1105 1086 1107 0.79
19 25 1.8e-07 1.5e-05 25.2 2.1 2 23 1197 1218 1196 1218 0.98
20 25 1.4e-06 0.00011 22.4 4.0 1 23 1224 1246 1224 1246 0.99
21 25 0.0032 0.26 11.8 5.3 2 23 1255 1276 1254 1276 0.96
22 25 0.0011 0.093 13.2 4.1 1 23 1282 1304 1282 1304 0.98
23 25 8e-05 0.0067 16.8 5.6 1 23 1416 1438 1416 1438 0.98
24 25 1.4e-05 0.0011 19.3 0.9 1 23 1442 1464 1442 1464 0.98
25 25 0.0032 0.27 11.8 1.0 1 22 1470 1491 1470 1491 0.96

Sequence Information

Coding Sequence
ATGATGAAAGCAGCACAAGCTCCTGGAAGTGACAATGTATATACAACTATTCCCATTTCTTACAATATATTGCAAACCTCAATATACAATCATAACTTTCCTATAGATATAGGGCCAAGTGTCATTATGACGCTTCCTGAAAAGACTACAAATCTCGCAGATCCTCAACAgGTTAATAACATGCTAATGAACCaaatcgaaattattaattcaatagaaAGTACTAACGTTACgtcatcagatatggaaatggcaGGCACAGCTACAACTTGTATCATTAATCAAGAAAGTATATCAAGTACCAATCATTTATCGagtaaaaacaaggaaaacctaAAGTGCGATTCTTGCAATAAAGAATTTGATAAAGTTAGTGCATATAAGAAACACTTGTTAATTCATAGAAACGTTAAAAGATTTAAATGCGAACATTGTTTCGAAAGCTATAACATTgaagataattataaattacatatgGCCTTACATCAGCAAGGTAAACCATCATGTCCTTTGTGCAAGAGACAGTTTCAGAGATTAGCTAGTTTGAAATCGCATTTGCTAATGCATCAAGTTGAAGAGACGTTTGTTTGCAAAGAATGCCTGGCTGAATTTGAAAAAGAGcacgaatataataaacacataCAAACTCATAGTTCTGACAGGCTGAAGATGCTTGAAAACATACCATACATTTGTTcctattgcaattatttattcgaAGATGCAAAAGACTATAAAGAACATGTTTCTTACCATATTAAGAtaaagaaattagttttcaaCCCAAAGAGAACTAGAAGACGTACTACTAATAATAAGGAATACACTCATAGGTGTACAGTATGTAGCAAATCGTTTCCTAAGAAATGCCTGCTAGAGAGGCACATGAGGATTCATAATGGTGAGAAGCCATTTGCCTGTCCAAAATGTGATAAAGCTTTCGCTCAGAAAAGCACCCTTCAAATACATTTAGTGAAACATTCGGGCCACAAACCATATAAATGTACCTTATGTTCTGCCGAATACTTCCAAAAGGGAAACCTTCGAGTACATGTTGAAAAAACTCATACAGCTCCGCCTAATATCgataaaatgtacaaatgtacTCAGTGCACATGTATATTTAGAAGAATCGGCTCTCTCAATGGTCATATAACTAAAACACACGGTAGTATTAGAAGCGAAAAATCTATCGATGAGTTCCTAGATACTGATGATAAAGTGAGAGTTCTTAAAGAAATGGCCGAACAGATCATGTCAAAACCTTCTGATGAAAacagagaaatagaaaaatcaacAGGAAAAGCAAACACGGACTCCTCAGATGCAACAACAACcaatgaaatatttgtaaaattagcgGAAAATAGTGTGGATGGTTCAATGAGACGATACATCGTGAAACAACGAAAAGTTGATGGCATGAAGTGGTTTATTTGTGTATATTGCAGCAAAGAATTTAAGAAACCGTCAGATTTAATAAGACATATACGAATTCATACTAGAGAGAAACCATATAAGtGCAAAACTTGTAATCAGTGTTTTGCTTTGAAATCCACTCTATTAGCACACTTGAATACGCATGAAGGAAAAAGagattttcaatgtttaatatGTTGCAAATTTTTTACTTCATCTAAGACGTTAAGTGTGCATATAAAGAAACATAGTAAGAATGGATCGGTAACCTCTTTGAAGTACAAATGTTCAACTTGTAGTAAACTCTTTGGTACCCTGGCGAAAGTCAGAAGTCATATGGAAGTTCACAATTGCGCTAATGATGATATTGAACTGAATTGTAGTAGACAAGAACAGTctgaaattactttaaaaccaCCTATGATAGAGACTGATCAAGGTTTGGTATCAGTACCTGCTCTCAAACCAAGGATACCCCATGGAGATATGGAAGAGTACAAACATAGGCCATACAAATGCCATAAGTGTAATGCGGCGTTCATGAAACCTGCTCATGTAAAAAGGCATATGGTAACGCACTCTGGCGAGAGAAACTTTAAATGCGATTTGTGTTCAAAGTCATTTTCTACATCTTACGCTCTCAAGGGGCACATAAAATTTCATGATCCTGAAAAGCGATTTAGTTGTTCGCTATGTCCCAAGAAATTTGTGGCCAAggaattgttgaaaaaacaCCAAATAAAACACTCTACAGTGAGGCCTTATATTTGCCCCTATTGCAGGAGGAGGTTTAAAACTGCTGCATTTTGtcgtaaacatataaatatacacaGAAATGATAAGAGTATATTAGCTGATAGTTTGGAGGTATCCGCAAGCAATCCTGCTAAAATCATTAATCTCTCAACTACATTAGCAGATAATCCGTTTGATTTAGATACACCAATGGACAGTGGAACGATATTTCTCACATCTCAAGATCCTGATGAATCAGAGCCAATTGAGAATATAATAACGGAATTACCTTCATTTGCGCAAAACAAAGCAATGAAaagtaaagcaaaaacaaagaaatctcaaaataaacaagagGAAACGGAAGAAAGCACGCCTAATTCTTATGATCAGGATGTATTGAACTTACCTAGGAATGCTCAAATATTCGTGTCGAAAGAAGGACATTATACTATTGTAATGCCAGAACAAAACGAAGTTGAAGTTACTACTGTTAATTCCAATATAGAAGAAATTGATCAAGGTGCTACAGAGTTTGTTAACTACGATGAATATCCATCAGTTAGTAGCGATGTATACAATACATTGTTATCTAGTGTCAAGTTACAGaacaATGATCCTATCTTAATGAGTACTATTGGAGAATCTCAAGATGCTAACATATTATTCATGGATCCAACGTTGTCACAAACCGCCGAATTTCCAAACGAAGCTCAAAATTTCGAATCTTTTAATCCAACGATATTCAATACCGCCGTTGATTTGCCTCTGGGCGTTCAATCGGCCAATGTAAATTCAACTTTTACCCAAAACACGCAGTCAATCCTATCATCTGCCAGGCACGATgggaaatcaaataatttaaaattaagcttCCCAGACAATGTGAATATACAAGCAAACGCCAATAAGAAGTCTTCTCATACAGCCGATAGTTCGAAGTTGCTGTTAGCGTCGGAGCCAATGAATTTAAACGATAATTTGATTATCACGCTGAACGGCGATGAAATTCctggcatgaatttcaatttcaacaatgGCCTAAATACTTCCGctgacaatttaaatttgaatattatagaTAATGAGATACAGAATAGTCTTATGTGCACTATTTGCAAAGCTACGTTTGAGAATGGTAATGAGTCAGAGAAACATCAATGTATTGAGCCGATTTCGGCCGAGTTACATGAGAATGATACCGATGATAGTATGAACGCAATGGATCTTAACGGAGACTTGGCAAATATCCAGCAGGATGAGCAAATTACTCTAATTACAGATTACAATGATCAGCTTCAAACTACTCACGTGGAAATTTCAACCGATGAGCATAGTATTGATTCGCCCATCATCAAAGAAGCAGGGAATGACAGTGAAGATAGTAAAGTTAACATACATTATGGAAGGGATAAGTCGAAAAAACCAGACAATAAATGCACCTATTGcagtaaaacatttaaaaaagctTCAGACCTGattCGCCATATAAGAACCCATACAGGGGAGAGGCCGTTTACTTGCAATAAGTGCAGTAAGAGTTTTTCGCTTAAATCTACCCTGCAATCCCACCAAAGAACACATAGTGATATAAGAAGTAGAGACTGTGTTTGCACAGTTTGTAATTATACTTTTAGCTGTCGTGCTACTTTAAAAACTCACATGCGTATTCATACAGgGGCAAAACCTTATGCGTGTAACCTTTGCCATATGAAATTTAGAACATCATCCAGTAGAAAGTCTCATTTGCTTACTCATGCCAAGCAATCGAAAAAGAGCGAGTTGACGAATACTAATCAAGCAAATCGCTACGAGGAGCATGCTACGACGAACGATTCTACGAATTTGCAACTTACCTTTGATAGTACAAACGCCACTGTTGAAAATGCGGAGAACAATGAAGTTCAACATATAGAAGGTGTATCTATGGATCTACTGCAACAGTTGCAAAATGCTGGATTTCTATTCACGGAAACCAGCAACGATGTATTAGGCGACGGGCTGATGCAGTTAAACTACGATACAACGCACTTAAACATTATAGATTCAAATATCCCCGTTTCAATCGAGAATGGGCAAAAGCTGAagaaatttgaatgtaatttttgccATAAAACGTATACTACAAAAGCAGTCCTAAGGAAACATCAGAAAAGACATAAGAAAGCCTTTCAGTGCACTAAATGCGATAAGCAATTCGATTCAGAAGATTTATTAGAGAAACATGTGAAATTGCATTCGGGTTATAGGCCGTTTTCATGTACTCATTGCGCCAATAGCTTCAGCGAAGAAGGGAGCTTGAAGACACATATGAAGCGGGCCCAATTGGATTGGAGTAACGGAGTAACCTTTAAAGGATTGGCCGAAGTTAGGACGACGTTCGTGAACATTATCCCCGGGAAATGGCCGGACATGCTGGTCATCAGCAAGAGTGGTTACGCTGGCTGCGGAGGCCCTTCGGGTAAGATTGCCATCCCTCGAGGAAATGACCCATATCGACTG
Protein Sequence
MMKAAQAPGSDNVYTTIPISYNILQTSIYNHNFPIDIGPSVIMTLPEKTTNLADPQQVNNMLMNQIEIINSIESTNVTSSDMEMAGTATTCIINQESISSTNHLSSKNKENLKCDSCNKEFDKVSAYKKHLLIHRNVKRFKCEHCFESYNIEDNYKLHMALHQQGKPSCPLCKRQFQRLASLKSHLLMHQVEETFVCKECLAEFEKEHEYNKHIQTHSSDRLKMLENIPYICSYCNYLFEDAKDYKEHVSYHIKIKKLVFNPKRTRRRTTNNKEYTHRCTVCSKSFPKKCLLERHMRIHNGEKPFACPKCDKAFAQKSTLQIHLVKHSGHKPYKCTLCSAEYFQKGNLRVHVEKTHTAPPNIDKMYKCTQCTCIFRRIGSLNGHITKTHGSIRSEKSIDEFLDTDDKVRVLKEMAEQIMSKPSDENREIEKSTGKANTDSSDATTTNEIFVKLAENSVDGSMRRYIVKQRKVDGMKWFICVYCSKEFKKPSDLIRHIRIHTREKPYKCKTCNQCFALKSTLLAHLNTHEGKRDFQCLICCKFFTSSKTLSVHIKKHSKNGSVTSLKYKCSTCSKLFGTLAKVRSHMEVHNCANDDIELNCSRQEQSEITLKPPMIETDQGLVSVPALKPRIPHGDMEEYKHRPYKCHKCNAAFMKPAHVKRHMVTHSGERNFKCDLCSKSFSTSYALKGHIKFHDPEKRFSCSLCPKKFVAKELLKKHQIKHSTVRPYICPYCRRRFKTAAFCRKHINIHRNDKSILADSLEVSASNPAKIINLSTTLADNPFDLDTPMDSGTIFLTSQDPDESEPIENIITELPSFAQNKAMKSKAKTKKSQNKQEETEESTPNSYDQDVLNLPRNAQIFVSKEGHYTIVMPEQNEVEVTTVNSNIEEIDQGATEFVNYDEYPSVSSDVYNTLLSSVKLQNNDPILMSTIGESQDANILFMDPTLSQTAEFPNEAQNFESFNPTIFNTAVDLPLGVQSANVNSTFTQNTQSILSSARHDGKSNNLKLSFPDNVNIQANANKKSSHTADSSKLLLASEPMNLNDNLIITLNGDEIPGMNFNFNNGLNTSADNLNLNIIDNEIQNSLMCTICKATFENGNESEKHQCIEPISAELHENDTDDSMNAMDLNGDLANIQQDEQITLITDYNDQLQTTHVEISTDEHSIDSPIIKEAGNDSEDSKVNIHYGRDKSKKPDNKCTYCSKTFKKASDLIRHIRTHTGERPFTCNKCSKSFSLKSTLQSHQRTHSDIRSRDCVCTVCNYTFSCRATLKTHMRIHTGAKPYACNLCHMKFRTSSSRKSHLLTHAKQSKKSELTNTNQANRYEEHATTNDSTNLQLTFDSTNATVENAENNEVQHIEGVSMDLLQQLQNAGFLFTETSNDVLGDGLMQLNYDTTHLNIIDSNIPVSIENGQKLKKFECNFCHKTYTTKAVLRKHQKRHKKAFQCTKCDKQFDSEDLLEKHVKLHSGYRPFSCTHCANSFSEEGSLKTHMKRAQLDWSNGVTFKGLAEVRTTFVNIIPGKWPDMLVISKSGYAGCGGPSGKIAIPRGNDPYRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01499044;
90% Identity
-
80% Identity
-