Obor004311.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902654985.1
- Location
- LR736897.1:2481967-2489851[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-13 1.2e-09 37.7 0.0 1 44 70 113 70 114 0.89 2 2 1.4 2.3e+03 -1.6 0.0 14 22 115 123 114 123 0.79
Sequence Information
- Coding Sequence
- ATGTCTGACACTTCAAACTTGTTCGGCGTAAAAGTTAAGGGTGAAAATTCCCACTACAACTTAACGGTTTGTTACAATATGTTGTCCATGCGGCTGGACATGGAATTTCGCTATTTTCGAACTCATTACGTCGAGTTCGTCGAACGACGTTCGGACAAGTCATGccacggaaaaaaaaaattaggagcTCGTCGATATATGGACTATACCCCTGATATTGTAGATAGGGCAGTGCAGGCAATCAGAAGAGGACCTATGAACATCAACGAAGCAACAAAGATGTATGGTATACCAAGACGAACCTTGAGGAATGAAGTTCAAAGAAAGCACACCAATAAACGTGGCGGTGGAACAAGTCTTTCTGAAGCGGTGTAG
- Protein Sequence
- MSDTSNLFGVKVKGENSHYNLTVCYNMLSMRLDMEFRYFRTHYVEFVERRSDKSCHGKKKLGARRYMDYTPDIVDRAVQAIRRGPMNINEATKMYGIPRRTLRNEVQRKHTNKRGGGTSLSEAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -