Obor015821.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- lz
- Assembly
- GCA_902654985.1
- Location
- LR736888.1:3439612-3606331[-]
Transcription Factor Domain
- TF Family
- Runt
- Domain
- Runt domain
- PFAM
- PF00853
- TF Group
- Beta-Scaffold Factors
- Description
- The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia [1]. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene [1]. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction.In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-74 9.9e-71 235.4 0.0 2 129 44 171 43 171 0.99 2 2 2.4 8.7e+03 -3.7 0.0 22 39 319 336 305 337 0.83
Sequence Information
- Coding Sequence
- ATGCATCTACCAGTGTCGTTATCCAACTGCGCTCTTCCAGAAGAAGCTTGGCCTAAGATATCCAGGATGTGCGACCCTACGTCAGGCGGATACAACACTCAGGAGCTATGGTGGATGGAAAGGCTAATACATGATATTCAAGCCGAGCATCCAGGCGAATTAGTGAGAACCGGTAGCCCTTACTTCTTGTGTTCGGCGTTGCCGACGCACTGGCGTTCGAATAAAACACTGCCGGTCGCGTTTAAAGTGGTAGCATTAGGTGATATCGGAGATGGAACCGTAGTGACTGTAAGAGCGGGCAATGACGAGAACTTTTGCGCCGAATTAAGGAACTGTACCGCGGTGATGAAAAACCAAGTGGCCAAATTTAACGATTTACGATTCGTTGGAAGAAGTGGAAGAGGGAAATCATTCTCAATCACGATAACCATATCCACAAATCCGCCGCAAGTAGCAACCTACAGCAAAGCGATCAAAGTAACCGTCGACGGACCCCGTGAGCCGAGGTCGAAATCCAACACCCAGCAATACCGAGTAGGTGGATTTGGCCAACGGCCGTTCATCGATCCCGCCTTCACCCACTCATTGAGGGAAATCGAACCCTTTCCGAGGAAAACATCTTGTCACAATAATGAAGTTTCCCAAAGTTATAAAACTGAAAGTCAAGATACCACAACGCCGACCACCATGAATCCAACCTCGTCTTCGCACTGCACGCAACCGCCATGGCAAAGCGCGCCTTACACACCGTACACACCTCCACAATCTTCAACCTTCTACGAAGGTCAATCGGATTTTTCGCACAATTCGACGCTACACTTACCTACAGTATTGCCGGAACAAACGCAACATGAATACATTAGCACATCTCTAACATCCCCTGCGCCGATCTTCAACAGCGCAAAGGCTGATTTAGATCCAATGGTATCTCCAAACGGCAGGTATCTCGATAACTGTGCGTACTATCCCAACAATTGGAGCAGCCATACGACGTATCCAACCAATTATAACTACTACAACCCGCCCAATAATAACCAGCAGTATCTATCCAGCGGCGCGACGATTATCTATCCTCAAATCCAATATTCGACGACGAACCAAAACCAAATCCACTTCCACTTGCACGGAAACCCGGAGAAGATCGACCAGTATTTAAGTTTCAATGAGAACTTACCGCTGCCGCCGGCAAGAACAACATTAGAAATAGGTCAGACAGCGACCAACAATGAGGCTGACGTAACGCAAGGTCACGGGCAGATAGAGGAAAGCGACAGAACGCAGGTGCAAGTTACTGATCCATCCGGAGTTTGGAGGCCATACTGA
- Protein Sequence
- MHLPVSLSNCALPEEAWPKISRMCDPTSGGYNTQELWWMERLIHDIQAEHPGELVRTGSPYFLCSALPTHWRSNKTLPVAFKVVALGDIGDGTVVTVRAGNDENFCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFSITITISTNPPQVATYSKAIKVTVDGPREPRSKSNTQQYRVGGFGQRPFIDPAFTHSLREIEPFPRKTSCHNNEVSQSYKTESQDTTTPTTMNPTSSSHCTQPPWQSAPYTPYTPPQSSTFYEGQSDFSHNSTLHLPTVLPEQTQHEYISTSLTSPAPIFNSAKADLDPMVSPNGRYLDNCAYYPNNWSSHTTYPTNYNYYNPPNNNQQYLSSGATIIYPQIQYSTTNQNQIHFHLHGNPEKIDQYLSFNENLPLPPARTTLEIGQTATNNEADVTQGHGQIEESDRTQVQVTDPSGVWRPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00956084;
- 90% Identity
- iTF_00956084;
- 80% Identity
- -