Oabi008578.1
Basic Information
- Insect
- Orussus abietinus
- Gene Symbol
- -
- Assembly
- GCA_000612105.2
- Location
- NW:32746-35832[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00049 0.026 14.1 0.1 3 23 441 463 440 463 0.94 2 9 0.012 0.66 9.7 1.1 1 23 469 493 469 493 0.98 3 9 7.6e-05 0.004 16.6 0.5 1 23 499 523 499 523 0.97 4 9 0.0026 0.14 11.8 1.0 3 23 531 554 530 554 0.94 5 9 0.002 0.1 12.2 2.3 1 21 561 583 561 585 0.94 6 9 0.0013 0.067 12.8 0.7 2 23 593 616 592 616 0.95 7 9 4e-06 0.00022 20.6 3.5 1 23 622 646 622 646 0.98 8 9 0.00014 0.0074 15.8 0.5 1 23 652 676 652 676 0.95 9 9 0.0017 0.089 12.4 0.8 1 23 682 704 682 704 0.98
Sequence Information
- Coding Sequence
- ATGCCTCGTAAAGTGTTAACCTTACCGAAAAGTTTGGCTACCAAATCGAGACAGATACCCCGAATTTTCCAGCACCGGCGAGGCAGCATCCCATCTCTTCCTGGTGTAACAAACGACGGGTTTCAGGAGGATCGCGTTCGAGCGGAAGGTAACATAGATGTGGGTAGAAGTAGTGTCGAGAGTGTCGTTAAGGTTAACTCCAGATTCTGTCCCTGGGAGGGAGACCGTCGGCCGACCGACGGCAATGATGTGCTCGACAAGAGGGCACCGGACGCCGAGCCGGTACCTGACATTGAGAAGTGGTTCAAGTCGAGGACGGAGTCGGTGTCGAGCATGGACCTGGATGCTGTGAAGCCGGAAGTCGTGGAGGGGGTCGATCGATACCTGACGGAAGAGCTGCCGCACTCTTTTCTAGCGAAGGATTCCGATACCCTCTCTATAGACATCGACATATCGGACAAAAAGATGGGCCTGAGCTACGATCCGTTGCTGCATGAATTGCGCAGCGACAAGCTGCTCGACGTGTGCGAAAAGGATGAATTTGCCCTGGCCGACTTCAGACTCGATCAACTTGATCCAATGCCGCTCTCTCCTGACGATATGGTGGTGGCTGGGGAGATTCTGCCGAAAAACCTTGGGTGCTCCGAAGGGTCTGAAAGGAATGATGATTGTACAAAAGAAGAGACCACAGAGGAGGTATGCAAGAGCAGCGAACACGAGGAAACGTCTTCGAGTTTAAGACATTGTGGTGAGACGACAAATGGTGGATTAGTGGACAGTTCCAGCCAAGAAAGAGATATCTGTTTAAAAGACATAAATGATGAAGTTTCCAATGTGCTGCCTTCGATCGAATTAGAGGTTAAGGAAGGGTGGGAAAAAGAGCAGAAGTTCAGGACACAAACTGGTGGGGAATGTCGGATAACAAAAAAACGTAGGAAAATCGTCAGAAGATTGGAAAAGACTACAGCGAGGTGTCCTAATGATCCCTACCACTTAGACAGGAAGGATGCGATTATGGCAGTAGTTGCGATCTCTACGGACAAAATTTCTAACACGACTCAGATTGTAATAAATACTGGGAAAGAAGAGCAAATATATCAGGGCAAAACCTCAGAGCTCATCGAAGCGACAGGAAATTTTCCAAAGCTCCCTAACCTTGACGGATCCACTGCTTGGAATGGCATTGCAGAAAATGGCAACGGAGATGGTACCACGAGTAATCAACACGAATTGGTGATATCAAATGCTTTGGAGGAATTAGGTATCACTGACGATCGCTTGCAGCCTGTCACAATCACGGAGCAGGGAAAGGTCTGGCTGTGTCCTCGAGAGGACTGTGGCAGACAATTCACTAGACTCTATGCCTTAAAAGGACACCTGTTAGCACATTATGGCGTCAGACCATTCAAGTGTAACTTCGAGGGATGCGCCTGGGCCTTCTACTCAGACTTCAAATTGAAGCGACACAAGGAAACGCACCTGAAACGAAAAGACTACGTCTGCGAAGTGGCTGACTGCAACAGAAGGTTCACAACGATCTACAACCTGCTAAGTCACAAGAAGCTGCACAGCAGACCCAATCGAATGGCATGTCACGTGCCAGACTGCCAGGAGAAATTCCAGACGAAGAGAGCCTTGGAACTGCACATGACCAAATCCCACGATCAAAGCCATGCTCCATATGCATGCAAGCAGGAAGGTTGTGGGAAGAAGTACTACAGCAGCAACGCCCTGACATCCCACCAACGATGCCACAGCTACAAGGAGGTCGACGTCAAGTGTTCCTGGCCCGGCTGTGGCAAGCTCTTCGACAAACCTTGCCGACTCAAAGCACACCTACGTTCGCACACCGGCTGCAAACCATATCCTTGTACCTTCCAGGACTGCCACTGGGCCTTCTCGTCGTCGAGCAAGCTGAAACGACACCAGAAGAAGCACACCAACGAGAGGAAGTTCGTCTGCGACGTCTCCTCTTGTGGCAAGGCCTTCATGAGGTCGGAGCACCTCAGGGAACACGGACTCACGCATAAAGAAGGCAGGTACTTCCGGTGTTACGCCTGCGACGCCAACTTCTCCGCCAAGAGCAGTCTCTACGTCCACCTAAAGAAACACCGAGCCACGGAGGCCGCGGGTGGAACTGTTCGCACAGTGCCGGCCAGGGGAGCTGCTAGGACGGAATTGACCCGGGAAGACGTAAAAAGGCTCAAAGACGATCCCCCTGATGCGGCTCTGGCTGCTGCAGATCTTGCCGAGGAGCTCTCATCGCTGTATTATCAAGAAGACCTGGTGGGTGCCGGCGAGTGCCAAGTTCTCCTGCTAGACCCGGGTACCTCCGAGGAACCCGATGGCCTACGCGACCTGCGAGATCTACGCTGA
- Protein Sequence
- MPRKVLTLPKSLATKSRQIPRIFQHRRGSIPSLPGVTNDGFQEDRVRAEGNIDVGRSSVESVVKVNSRFCPWEGDRRPTDGNDVLDKRAPDAEPVPDIEKWFKSRTESVSSMDLDAVKPEVVEGVDRYLTEELPHSFLAKDSDTLSIDIDISDKKMGLSYDPLLHELRSDKLLDVCEKDEFALADFRLDQLDPMPLSPDDMVVAGEILPKNLGCSEGSERNDDCTKEETTEEVCKSSEHEETSSSLRHCGETTNGGLVDSSSQERDICLKDINDEVSNVLPSIELEVKEGWEKEQKFRTQTGGECRITKKRRKIVRRLEKTTARCPNDPYHLDRKDAIMAVVAISTDKISNTTQIVINTGKEEQIYQGKTSELIEATGNFPKLPNLDGSTAWNGIAENGNGDGTTSNQHELVISNALEELGITDDRLQPVTITEQGKVWLCPREDCGRQFTRLYALKGHLLAHYGVRPFKCNFEGCAWAFYSDFKLKRHKETHLKRKDYVCEVADCNRRFTTIYNLLSHKKLHSRPNRMACHVPDCQEKFQTKRALELHMTKSHDQSHAPYACKQEGCGKKYYSSNALTSHQRCHSYKEVDVKCSWPGCGKLFDKPCRLKAHLRSHTGCKPYPCTFQDCHWAFSSSSKLKRHQKKHTNERKFVCDVSSCGKAFMRSEHLREHGLTHKEGRYFRCYACDANFSAKSSLYVHLKKHRATEAAGGTVRTVPARGAARTELTREDVKRLKDDPPDAALAAADLAEELSSLYYQEDLVGAGECQVLLLDPGTSEEPDGLRDLRDLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -