Oabi000670.1
Basic Information
- Insect
- Orussus abietinus
- Gene Symbol
- YGR067C
- Assembly
- GCA_000612105.2
- Location
- NW:48838-52614[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00069 0.037 13.6 0.7 2 23 117 139 116 139 0.96 2 9 0.00067 0.036 13.7 0.3 1 23 143 165 143 165 0.94 3 9 0.00047 0.025 14.1 1.1 2 23 171 193 170 193 0.95 4 9 1.8e-05 0.00096 18.6 1.1 1 23 200 223 200 223 0.95 5 9 1.2 63 3.4 0.2 2 12 229 239 228 242 0.82 6 9 0.0064 0.34 10.6 2.5 1 23 258 280 258 280 0.97 7 9 0.00014 0.0075 15.8 0.7 1 23 284 307 284 307 0.97 8 9 2.5e-06 0.00014 21.3 0.5 3 23 314 334 312 334 0.97 9 9 4.3e-06 0.00023 20.6 1.1 1 23 340 362 340 362 0.99
Sequence Information
- Coding Sequence
- atGCATAAGAGAGTTCAACTCaagatttcatttcaaaatGTCCGCTTCTTCTTATCGAATGACATCCCTAAGACAAGCACTGATCCACTTCAAATCCAGCCTTATGTGATGATTGAAATCCACGGGAAACCAGCTTGGGTGCCACTTTCAGTGGTAGAGCCGAAAACCCTTCTTGAAGAAGCTCACCCTTCCCCCTGCTCCGACTTTTTGAAATATTCCCTATGGAAGGACTCGGCACCCCACAGACCAACAAACCTACCAACAGATCAGGATATCAATTCCACTGGTTGCAGCCAGACGGAGTCTCAAGCGGAGGATGTCGATAAGATCCTAAGTAGCGTTCGAAGCACTTGTCCGTTCTGCGGCAAAAGATTGAAGGATGAGCAAACGGTCGAGAAACATGTCAAAATGAAGCACCGAAAGCCTTTCGAGTGCGATCTATGCAACCGAGCTTTCCGCACATCTCAAGAGGTCGGCAAGCACAAGATCGGTCACGAAAACGAAGACTTGGAGTGCTCGGTCTGCAACCTGAAGTACAAGACCAAGATGGGTCTGAAGCAGCACCGCATCAGGACGCACAGCAGCTGCGAATCTAAGTACATTTGCGACCACTGCGGGAAAAGCTACAAGCTTAAAAACGACCTGATGCTTCACATAGGAAGAACCCACATGACGGAGAAAAGCGTGTGTCGTTATTGCGGGAAGGAAGTCAGAGATGTCAGGAACCACGAGTGGCAGCATCAGAGACGAAGTCGAGTTACCAATTACAAGTATCCCTGTTCCCTCTGCGCGAAGAAGTTCCACACGAAGATGAAGCTGGACAATCATCTCGTGAAGCACAAACAAGGATTCAGGTGTCCCGAGTGCGAGGTCGAATGTCGCAGTCCGAAAGCTCTCGCCAATCATAGACGTCTGAAGCATAACCCTGCCTGCATGATCTGCACCATCTGCAAGAAGGTGTTTCCTTCCAGCAGCAATTTCTACCAGCACGTGCTCACTCATGCCGGGATCAGACCGTACAAATGCGACATTTGCGACGAAAACTTCACTCAACGCTCGCCGATGCTCAGACATAGGAAGTCTCATCCTGGGCCATTACCACCTACGCCTCCACCCACGGCCATTGCGGAACTTGCTAAAAGAGTGTTGCAGAAATTCTGA
- Protein Sequence
- MHKRVQLKISFQNVRFFLSNDIPKTSTDPLQIQPYVMIEIHGKPAWVPLSVVEPKTLLEEAHPSPCSDFLKYSLWKDSAPHRPTNLPTDQDINSTGCSQTESQAEDVDKILSSVRSTCPFCGKRLKDEQTVEKHVKMKHRKPFECDLCNRAFRTSQEVGKHKIGHENEDLECSVCNLKYKTKMGLKQHRIRTHSSCESKYICDHCGKSYKLKNDLMLHIGRTHMTEKSVCRYCGKEVRDVRNHEWQHQRRSRVTNYKYPCSLCAKKFHTKMKLDNHLVKHKQGFRCPECEVECRSPKALANHRRLKHNPACMICTICKKVFPSSSNFYQHVLTHAGIRPYKCDICDENFTQRSPMLRHRKSHPGPLPPTPPPTAIAELAKRVLQKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -