Oabi000672.1
Basic Information
- Insect
- Orussus abietinus
- Gene Symbol
- -
- Assembly
- GCA_000612105.2
- Location
- NW:53634-137173[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3.7e-05 0.002 17.6 2.2 1 23 403 425 403 425 0.97 2 23 0.6 32 4.4 0.2 2 23 431 453 430 453 0.90 3 23 0.0047 0.25 11.0 6.3 1 23 484 506 484 506 0.97 4 23 0.0097 0.52 10.0 4.9 2 23 512 533 511 534 0.93 5 23 0.0012 0.066 12.8 3.3 1 23 560 582 560 582 0.99 6 23 0.0075 0.4 10.4 1.5 2 23 588 610 587 610 0.93 7 23 0.0024 0.13 11.9 0.4 1 23 617 640 617 640 0.94 8 23 1.4 72 3.3 2.8 2 23 646 664 645 665 0.86 9 23 0.0065 0.34 10.6 2.8 1 23 674 696 674 696 0.98 10 23 0.012 0.62 9.8 1.4 2 23 701 723 700 723 0.95 11 23 0.0038 0.2 11.3 2.8 1 23 725 748 725 748 0.97 12 23 2.7 1.4e+02 2.3 1.1 1 23 832 854 832 854 0.96 13 23 0.00067 0.036 13.7 0.6 2 23 860 882 859 882 0.94 14 23 0.0059 0.31 10.7 0.8 1 23 1065 1087 1065 1087 0.97 15 23 0.0016 0.083 12.5 0.5 2 23 1093 1115 1092 1115 0.95 16 23 0.0016 0.083 12.5 0.4 3 23 1127 1147 1126 1147 0.98 17 23 0.097 5.2 6.9 0.3 2 23 1153 1175 1152 1175 0.95 18 23 0.00076 0.041 13.5 2.5 1 23 1182 1205 1182 1205 0.97 19 23 9 4.8e+02 0.7 0.9 3 23 1212 1229 1210 1229 0.59 20 23 0.0078 0.41 10.3 0.3 2 23 1241 1262 1240 1262 0.95 21 23 0.0018 0.096 12.3 0.8 2 23 1271 1293 1270 1293 0.95 22 23 0.00056 0.03 13.9 1.1 1 23 1298 1320 1298 1320 0.98 23 23 0.0014 0.074 12.7 4.4 1 23 1326 1348 1326 1348 0.99
Sequence Information
- Coding Sequence
- ATGTCCTCCCTCGACTATTTGGACCTGTGCCGGCTGTGTCTCGTGAAAGATCGCGTCTCCGTGCCGATtttcgagggcgagggcgacgTCAGGcagattttcctcaaaattgcAGCCTGCCTGCCGGTCAAGATTGCCAGAGAAGACAAACTACCCAAGAAAATATGTGATGACTGTGTGTATAAAGTAGAactattttatcaattttggaATACGACCGCGAACGCGGAGAAGCAGCTTCTGCAATGGCTAGGAGAAGTTGGACTGGAGGAGGACAAACAAACCTACGTAACGGGAGTCCTCAACCCGAATGTGATGAAGCAAGAACAAAGCGGTGAGAATAGATTAGATGGTAGCGTGATGCAGCAAGTCGCTGGACATCAAGCTAGTATGGGTATGGGTATTATCGACAACATGACGTTGGGCATGCCCATGATGATACCCACTGCCAGTCAACAACAAATGACCTCAGTTCCTATGGACACCGGTGGTACGACAGTACAAACGGTTCAGGCAGTGCCAGGACCTAGTACGCAAGCCACTCACGACCAAATGGCGCAGAATCAAGTAAATGCTTCTGCACCACAAGAAGAAGACGAGGAGACTAGCGAAGAGGATGAAAACTCCGACGACGAGTGCGACGGAGATGAAGGCCTACCCGTTAAAGAAGAGAGCGAAGAGGACCCTAGCAGTAGTCGAACTATCGAACCTACGACGTTTGTCAACGTTTCGCTGGCATGTGACGAAGCTGGTCCTTCGGGGCTCCAACAACAGAAGATTACTGAGATGCCTGAGATGACGATACCACAGCCAACGGATGCCGATCCCAAGTCTGGAAATGAAGATCCGCTTGACTGCCACCCATACTCTCTGATCGAATACGGTGGAAGATACACCTGGACACGATTAGGACACGGAAGCGGCCTGGTCGAAGATGCATTGAGTATTCCGCCATATCTATCAACGACTATCGAGTACACGGACACCAAGCCGAGTATTACGGAGTTGAAGAGAGCTTTAGCGGCAGCCTCGTTGCAAGCTTCCAAAAATCCCCAGGGCAAAGGGTCCACCCCACGTAGGGCGAAGACCCACCTTACAGAAGTAGGGAAATCACCGATGACCCTTCGCACCCCAAAACGTCGGTCGTTTTTCAACGAGGAACCCGACCTGGGGACCAACCAGTCGATGCCCAAGAAGATTCCAAGATTCCCCTGCACCTTCTGCGGAAAGAAGTTCACCACCGAGATGTTCCTCGAGAGGCACAGGAAGCTCCACGACGTGGGGTTCGTCGAGTGCAAAATGTGCAAGGCCCGGTTCCAGTCCATCCGAGGGGTACAGCGACATTACGACTGGGTCCACAAGGGCCAGGAGCCGGGGTTCAACCTGAGAAGTATCCGCTACGCTGAGATGCTGCAAGAACGCGAGGAGAAGTTGAAGAAGTCGAAGCGCTTCAAGTGCACCGTTTGCGTGAGAAGCTTCTCCAACGCGTACTGTCTGAGGATGCACAAGTGCTTGCACGACAGGGGGCCCGTGGAGTGCGAGATCTGCAAGCTTCAGTTTAAGACGAAGTCCTCGATGAAGCACCACTTCGTCCGGCACCACACCAGCTACGGGGCCGAAATCTCGCTGCAGAGCCGATTGAGTCGTCATAAGGATCTTAAAGTACCCTTGAAGTACTACAGATGCAACATTTGCTCGAAGGACTTCCATTATAAGGACGTCCTGGAGGAGCACAAGAAGACGCACGCCCTGGACTACCTCCAGTGCTCGATCTGCAACTTGAAGTACAAGACCAAGCTGGGTCTCCAGCAGCACCATGTGCGAGCTCATAGCTGTTCCCAGCCGAAGTTCGAGTGCGATTACTGCGGTGCTCGCTTCAAACTCAAGGGCGACTTGACTCCTCACATCTTCAGGAAGCACCTCAGCAGCAGCAAAGTGTGCAGCTACTGTGGGAAGGAGGTCTGGCACCTCCGCAGACACGAACGTGCCCATCATGAGCAACACGAAGGGCAGATCAAGTTCCCCTGCCACCTGTGTAACTTGAAGTTCTTCTCGAAGATTAGACTGGAGAACCACCTGTTGAAGCACAAGTGGGGCACCACGTGCCTCAAGTGTGGCGAACACTTTGCGGAGCTGAAGGATCTGGCGACTCACAAACGGGAGAAGCATTTCTTTACCTGTGATTACTGTCAACAGCATAGAACCAAAAAATCGGAACTGCTTCTCCATATCCAAAGAATACATCTGGCCCCAAAAGGAACCCCGTCGAAGATCAATTGCGTTGAGtttcggaaaagaaagaagactCCGAAATACGAGCTTAGTCAGGAAAGAAAGAACGATCAGAAAGTCGATCTTGGTCAGGAAGGAAACAATCGGAAGAGGGATTTTAGTCAAGAAGGACGGAACGATCAGATGAGCGATCTTAAACAGGAGAGAAAGAACGATCAGACGAGGGATCTCAGTCAGGAAAGGAAGATCAATCGGAGGAGCTTTCCTTGCCAACTTTGCATGTCGTCTTTCTCCTCGGCCCAAAAACGCAACGAACACAAGAAGATTCACGAAGCAGATTACATTCCATGTTCGGTGTGCGGCTTGCAGTTCAGAACAAGGATAGGCTTGACGAAGCACCACGCGCGAATGCACGACAATTATGAACTGAAGATCAACTTGAAGAGTTTCCGCGATTCGCACGCGATCGATGCTCCTCTTGAGCTGCTAGCCAATTTCGAGATGAAGAGGACGAAGCCATCCGATTCCGCGAGAAGAGACGAGGACATCGAGATGAAGAGGACACACTCATCCGATTCCACAAGGAGAGACGAGGACACCGAGATGAAGAGGACGAACTCATCCGATTCCgcgaggagagaagaggaCACCAAGATGAAGAGGACAAACCCATCCGATTCCGCGAGGACAGAAGAGAACACCGAGATGAAGAGGACGACCTCATCCGATTCCGCAAGGAGAGACGAGGACACCGAAAACGTCGACGACGATTCCGAGAGGGCTGGTACTTCCTTGGAGGCAATGAAGATCGAGAGAAGAGACCCAACATCCGGCATCTTTGGGCAAAAAGAAGGCCaaagtaaagaaataaacgatATGTTGAACAACACCTGCAACATAGAGACCCTAGCGAAAGAATTGGGAGCTGGAGAGTACGCCAATCTGGAGCGGAAGAAACGTTTCGCCTGCGGACTTTGCACGCGAACTTTTAAAACCGTCGATGAGCGCGAAGAGCACAAGAAAACCCACAAAAATGATTACGTGGAGTGCTCGATCTGCGGCCTTCACTTCAAGTCGTTACTAGGCTTGAAGCAGCACCGCATCCGTGCCCACGAGACCGAACAGAAGCTGAAGAAGCGCTCCTTGTGCAGACTTTGCAGACGAAGCTTCGCAACGgaagaggaactcgaagagcaCCGAAAGATCCACGGCGTGGACTTCCTGCAGTGCACGCTTTGCGACTTGAAGCTGAAGTCTCTGCTAGGTCTGAAGCAACACTACATCCGAGCCCATAACACCATGGAGCCGAAGTTCATCTGCGATCATTGTGGGAATAGGTTTAAGCTGAAGAACGATTTGTTCCTCCACATTCAGAGAACTCACATGTCCGTCATCGGCACGTGTCGTTTCTGCGGCAGGAAGTTGAAGGACCTGAAGAATCACGAGGCGCGACACAGACAGCGTCTTAAGGGCACCGATGGCCAACTAACGTGTTCGCTTTGCGGGAAAACGTTCTGGTCCCAGATAAAGCTCGACAACCACATAAGCTTGCACATGCAGACCCCGAACCAGGAGCTGCAGTGCCCTAAATGCGATTTGACGTTCCAGGACGTGAAGACGATGTCCCGACACAGACGGCTGGAGCACAGATCGGGCCCTTTCACGTGCACCATTTGTCAGAAGGTTTATCCTCTGCGGAATAATTTTTACCAACACGTTCTCACCCATGCGGGGATCAAACCGTACAAATGCGACATTTGTAAAGACGTCTTCAGTCATCGCACTTCCATGCTGAAGCATAGGAAGACTCATCCTGTGCCGCTTCCTCCCACGCCACCCCCTGTACCCATTGCTCAACTTGCTAAAGGGATCCTGCAAATATTCTGA
- Protein Sequence
- MSSLDYLDLCRLCLVKDRVSVPIFEGEGDVRQIFLKIAACLPVKIAREDKLPKKICDDCVYKVELFYQFWNTTANAEKQLLQWLGEVGLEEDKQTYVTGVLNPNVMKQEQSGENRLDGSVMQQVAGHQASMGMGIIDNMTLGMPMMIPTASQQQMTSVPMDTGGTTVQTVQAVPGPSTQATHDQMAQNQVNASAPQEEDEETSEEDENSDDECDGDEGLPVKEESEEDPSSSRTIEPTTFVNVSLACDEAGPSGLQQQKITEMPEMTIPQPTDADPKSGNEDPLDCHPYSLIEYGGRYTWTRLGHGSGLVEDALSIPPYLSTTIEYTDTKPSITELKRALAAASLQASKNPQGKGSTPRRAKTHLTEVGKSPMTLRTPKRRSFFNEEPDLGTNQSMPKKIPRFPCTFCGKKFTTEMFLERHRKLHDVGFVECKMCKARFQSIRGVQRHYDWVHKGQEPGFNLRSIRYAEMLQEREEKLKKSKRFKCTVCVRSFSNAYCLRMHKCLHDRGPVECEICKLQFKTKSSMKHHFVRHHTSYGAEISLQSRLSRHKDLKVPLKYYRCNICSKDFHYKDVLEEHKKTHALDYLQCSICNLKYKTKLGLQQHHVRAHSCSQPKFECDYCGARFKLKGDLTPHIFRKHLSSSKVCSYCGKEVWHLRRHERAHHEQHEGQIKFPCHLCNLKFFSKIRLENHLLKHKWGTTCLKCGEHFAELKDLATHKREKHFFTCDYCQQHRTKKSELLLHIQRIHLAPKGTPSKINCVEFRKRKKTPKYELSQERKNDQKVDLGQEGNNRKRDFSQEGRNDQMSDLKQERKNDQTRDLSQERKINRRSFPCQLCMSSFSSAQKRNEHKKIHEADYIPCSVCGLQFRTRIGLTKHHARMHDNYELKINLKSFRDSHAIDAPLELLANFEMKRTKPSDSARRDEDIEMKRTHSSDSTRRDEDTEMKRTNSSDSARREEDTKMKRTNPSDSARTEENTEMKRTTSSDSARRDEDTENVDDDSERAGTSLEAMKIERRDPTSGIFGQKEGQSKEINDMLNNTCNIETLAKELGAGEYANLERKKRFACGLCTRTFKTVDEREEHKKTHKNDYVECSICGLHFKSLLGLKQHRIRAHETEQKLKKRSLCRLCRRSFATEEELEEHRKIHGVDFLQCTLCDLKLKSLLGLKQHYIRAHNTMEPKFICDHCGNRFKLKNDLFLHIQRTHMSVIGTCRFCGRKLKDLKNHEARHRQRLKGTDGQLTCSLCGKTFWSQIKLDNHISLHMQTPNQELQCPKCDLTFQDVKTMSRHRRLEHRSGPFTCTICQKVYPLRNNFYQHVLTHAGIKPYKCDICKDVFSHRTSMLKHRKTHPVPLPPTPPPVPIAQLAKGILQIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -