Oabi008171.1
Basic Information
- Insect
- Orussus abietinus
- Gene Symbol
- -
- Assembly
- GCA_000612105.2
- Location
- NW:456996-460799[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.8 93 2.9 1.6 2 15 438 451 437 459 0.75 2 18 3.9e-05 0.0021 17.5 0.6 1 23 465 487 465 487 0.91 3 18 0.0091 0.48 10.1 0.9 1 20 500 519 500 522 0.84 4 18 0.041 2.2 8.0 1.8 2 23 530 552 530 552 0.95 5 18 2.9e-05 0.0016 17.9 2.7 1 23 558 580 558 580 0.98 6 18 0.0037 0.2 11.3 2.1 1 23 586 608 586 608 0.97 7 18 2.7e-06 0.00014 21.2 1.8 1 23 614 636 614 636 0.99 8 18 0.7 37 4.2 0.1 2 20 648 666 647 668 0.90 9 18 0.67 36 4.2 3.8 1 23 689 711 689 711 0.95 10 18 0.27 14 5.5 0.0 1 23 717 739 717 739 0.91 11 18 0.15 7.7 6.3 4.0 1 21 758 778 758 779 0.92 12 18 0.00032 0.017 14.7 0.5 2 20 787 805 786 807 0.93 13 18 0.0025 0.13 11.9 0.4 2 23 815 836 814 836 0.96 14 18 1.9e-07 1e-05 24.8 2.1 2 23 844 865 843 865 0.97 15 18 0.019 1 9.1 2.7 1 23 871 893 871 893 0.98 16 18 0.022 1.2 8.9 3.9 1 23 899 921 899 921 0.95 17 18 0.00014 0.0074 15.8 0.6 1 23 927 949 927 949 0.98 18 18 7.2e-05 0.0039 16.7 1.9 1 23 955 978 955 978 0.98
Sequence Information
- Coding Sequence
- ATGAACATAATAATTGAAGATTCTCGAGGAAACTTGATATCCATCTCTGTTGAAGAGACAGACACATTCAGTGAACTTAACAGACGTATGCAAAAAGAATATGGATTAAAAATGGACTTTAGTAATTTACAAGGGGAAGACAATATCGATTTAGATGAAAACATTCTTACTTCTCTAATGAGAAGCCAAAGGTTTGTTGTTGTCGGCGACAATACTGGTATTGAAACCGAAGGGACTATTGCAGAAAATCAATGGGAGGAAAAATATAAACCCATAGTAAAAGAagagataattatttatacagaagaattagaagaaaaaagtaCCGGTATCTTTCACAAACCAAATCCATTATTGAAAGAATACCCATTATCATTAGACCAAGTAccaaaaattgaagaaaatgtaGAGGTTCATCAGCAAAATGAAGGCATTGAAACTCAGAAGGATCAAATTAAGTCGAGTAATAATTATCTATATAATGGAACTCAAAGTGCGGCGAAAGTAGTTCTAGAAATAAAGAACGATGTGGCTTCCCCACTTTGTAGACTCTGTTCACGTAGAAGCGACAAAATGGTATATATTTTTGGATCAACCGACCTGGAAAAGAATATAGCTGAGAAAATAGATATCTGCTTGCCTATTATGGTAAACAAAACGGATACATTGCCAAAGCAAGTTTGTTATTCCTGCTTGGAGAAGTTAGAGATGTGTCACGAATTTCACAAAACCGTTTTAGCAtccgaattaaattttttcaaaatgagCTCGGATCCACAATACTCTAAAGCTGAACGGAAATTTTGTTTGCTATACAAGCAAAGTACGAAAAACGTTTCTTCCAAAGTTTTCAAAAGGCATCCAAATgaacaagaaaataattcaacagaaaatgaaaacgattcTGAACAAGTATCGAATAAGTCTCTGAATAATCagtcaattaaaaaaaaatatctattttcAGAAGTAAATAAGTCAACATTGACCGAGTCTTCAAATGCAGGCTCACTAAAACCAGAGAATACAGCTATAATTGTATCATCGTTCTTAACAGATCCATTAATTTCATCAGACAGTAAGAAAATTGAAGACTCTATATTACCAGGAATAGAACCTTGTAACGATTCAGAAACAAAATCGAAAACATCTCTTGAAAACAAATTTGAGCATACCCATGAACTTTCTCGTGAGATGTACTGTGGAAAAGAAGATGATAAATATGCACTTTATCCTTATGTAAATTTAGGTGAGCATGCATATAAAAAGTTAAGTCGATTTTCATTAGCAGACTGTAAGTTAAAGACTGTAACGTGTCGCGTTTGCGGCGCAAGTTTTCGCACTGTTAGAAAGTGCTATGAACATTCACAAGTTCATATAACCGAAGGTTATTATCCCTGCAGTATATGTGATAAAACATTTAACACGAAGGAAGAGTATAACGAGCACAGTGTTCAGCACACCGAAGgcaaaaaatatgaaaggagATTAGCCACCTATGTTTGCGGTGaatgtggaaaaaaatttgtcacCGAAGGAAGACTTCGGTTTCATACTACGTTTCATGAACCAAACGCTACCCCTCGCTATTGTGACAAATGCAACAAGTTTATGGTTTCAGAATCATCTCTTTACCATCATCTTCTTAGAGTACATTTACAGTACAAGGAGTTCTGTTGTGACATTTGCGGTCAACAGtttagAGCTCAAACACAACTGGAATCTCATCAGAGAAAGCACAAAGATGAGCGACCCTTTGAGTGTATGGTATGCAAAAAGCGTTTTTATTCCAATGAAATTCTGCAGCGTCACAAGAAATTGCATCTGCCGGATAAGCCCTACCAATGTGATCAATGTGGAAAAAGATTTGACCGAATGAATACCCTAACAAAGCACTTATTAAGACATCAGGTGGAAGCAGGTCGATCAATGTTATGTAACGTTTGCACTGGTTGCCACGAAGTTTTAAGCGAAGAGTCACAGATAACAACGCATAGCTTAACTTGTGAAGCCATTAGAAACTCGAATAAACAAACTGTTGAGGAAAAAACTTTGAGGGCTATGTACAGATGCGAATTTTGTGAACGATCTTACACCGAAGTTAGGTTCATGAAGATACACCGATCTCACCACAGTGGACCATTGCCTTACATCTGTATAATATGTGATATTGCTTTCGCAACTTACAATCAAATTACTGCACACAAATCTGCCCATAAAAGATCACCAAAAGATATCAATGCCAAGGAAAACGTGATCGTACCAAAGTACTTCTCCTGTGAGCACTGTGACAAACATTTCCTACATTATACCAGCATGAATGTTCACAGAAAGGTTTGCGAAACAGGCAAGGTTTGGAGGTGTCGATACTGTGGATCTACCTTCAGGAATGCAAAAGAATTGACGAAGCACAAGTCCGGCCTGGACAATGGCGAAACCTGGAACTGTCAAGAATGTAATATTACTTTCAAATCTATTTGTGCTTACGAGATCCACATGGAGGTTCACGATGAAACAATTATTGGCCTCACTTGCCCATATTGTgggaaaaaatttattcagAGAACACATTTGACCATTCACTTAAGGAGTCATACAGGGGAGCGCCCATACGCTTGTGACtactgtgaaaaaaaatataagatcAAAGCTGAAAGGGACAATCATCACAGGACTCACACTGGAGAGCGACCTTTCAAGTGTATTTTTTgcgagaaaagttttaccCATTCAGCCAGACTGAGAGAACACGTCAAATTTCACTCAGGTGTTCGACCCTACAAATGCACTCTCTGTGACCGAGCTTTCAAAAAAGCCAACGCAAGAACCGTGCACATGACCATTCACACTGGGGAGAAACCATATCGGTGTGATATTTGTGAAACGTTCTTTAGAAGAATCGGTGATATGCGAAAGCACAAGAGAACGCAGCATGGAATTGAAGAACGTTCAAACGCTATCAATACAACCAGTGACAATTTAAAACTAACAGCATGA
- Protein Sequence
- MNIIIEDSRGNLISISVEETDTFSELNRRMQKEYGLKMDFSNLQGEDNIDLDENILTSLMRSQRFVVVGDNTGIETEGTIAENQWEEKYKPIVKEEIIIYTEELEEKSTGIFHKPNPLLKEYPLSLDQVPKIEENVEVHQQNEGIETQKDQIKSSNNYLYNGTQSAAKVVLEIKNDVASPLCRLCSRRSDKMVYIFGSTDLEKNIAEKIDICLPIMVNKTDTLPKQVCYSCLEKLEMCHEFHKTVLASELNFFKMSSDPQYSKAERKFCLLYKQSTKNVSSKVFKRHPNEQENNSTENENDSEQVSNKSLNNQSIKKKYLFSEVNKSTLTESSNAGSLKPENTAIIVSSFLTDPLISSDSKKIEDSILPGIEPCNDSETKSKTSLENKFEHTHELSREMYCGKEDDKYALYPYVNLGEHAYKKLSRFSLADCKLKTVTCRVCGASFRTVRKCYEHSQVHITEGYYPCSICDKTFNTKEEYNEHSVQHTEGKKYERRLATYVCGECGKKFVTEGRLRFHTTFHEPNATPRYCDKCNKFMVSESSLYHHLLRVHLQYKEFCCDICGQQFRAQTQLESHQRKHKDERPFECMVCKKRFYSNEILQRHKKLHLPDKPYQCDQCGKRFDRMNTLTKHLLRHQVEAGRSMLCNVCTGCHEVLSEESQITTHSLTCEAIRNSNKQTVEEKTLRAMYRCEFCERSYTEVRFMKIHRSHHSGPLPYICIICDIAFATYNQITAHKSAHKRSPKDINAKENVIVPKYFSCEHCDKHFLHYTSMNVHRKVCETGKVWRCRYCGSTFRNAKELTKHKSGLDNGETWNCQECNITFKSICAYEIHMEVHDETIIGLTCPYCGKKFIQRTHLTIHLRSHTGERPYACDYCEKKYKIKAERDNHHRTHTGERPFKCIFCEKSFTHSARLREHVKFHSGVRPYKCTLCDRAFKKANARTVHMTIHTGEKPYRCDICETFFRRIGDMRKHKRTQHGIEERSNAINTTSDNLKLTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -