Oabi003705.1
Basic Information
- Insect
- Orussus abietinus
- Gene Symbol
- -
- Assembly
- GCA_000612105.2
- Location
- NW:117084-120000[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.057 13.0 1.0 3 23 265 285 263 285 0.92 2 12 0.0053 0.28 10.8 1.3 1 23 290 312 290 312 0.97 3 12 2.7e-05 0.0014 18.1 0.8 3 23 323 343 322 343 0.98 4 12 9.8e-05 0.0052 16.3 2.0 1 23 438 460 438 460 0.98 5 12 0.00028 0.015 14.9 3.0 1 23 465 487 465 487 0.98 6 12 2.5e-06 0.00013 21.3 1.5 1 23 528 551 528 551 0.94 7 12 1.2e-06 6.3e-05 22.3 1.9 1 23 583 605 583 605 0.98 8 12 0.00013 0.0069 15.9 4.0 1 23 619 641 619 641 0.96 9 12 0.00012 0.0065 16.0 4.7 1 23 647 669 647 669 0.98 10 12 0.0011 0.057 13.0 3.2 1 23 675 697 675 697 0.98 11 12 7.5e-05 0.004 16.6 6.6 1 23 703 725 703 725 0.97 12 12 0.00017 0.0091 15.5 0.3 1 21 731 751 731 752 0.93
Sequence Information
- Coding Sequence
- atgaaaatcaaaatggaAAGGAAGAGTTTGCCGGCTGATCCCGAAGGGATCGACAGGCTCTGTAGAGTGTGCctttcgcggaaaaaaaataacttatCCATATTTCGAATAAACGCGGACGATCCTGAGAGGAGTTCTAACCTCAACTTATCCGAGAAGCTCCGAGTCTGTGGCGGTATACAGATTCTTAAAGACGATGGGCTCCCTGATGGAATCTGTTTTGACTGTATATCAAAGATTAACCTTGCCCATAAATTACGTGAACAGTGTCAGTGGGCTGACGAAAAGCTTCGGAAACTTTATGGGATTCCTATCGATGCACACAGATCGGATAGACAGAAAGATCAATGGTCTCAGACAGAACCTTTCTCGGAATTGGAAGGTGTTAAAATGGAGCACCCGATAACATCAAGAAACAAAGATGCAGTTTCAGATATTGACAGCAATTCCGATACCGCAGAGAAaacattttctccatttccttATGGGAAGCACGACGAACTCGAAGAGAAAATACCTTTGTTCGTTGTTCAGAAGAAGTTAAGGGTGCAGATGAAAATAAGGAGAATGTTAATGAGAAAGGAGATCTTAAAAACAAGGCGAATATCGATGTTTAAAAGGATAACATcaatggaaaatttaaaaaattctaaggAGAGGCAAAGAcaatttattaagaaaaatgttaacgcAAAGCATGAATTCCTTGATCAGAACATGACACCgattagaaataatttgagACGTAGACCCAAAAGGGAGTCGAATCATAGAACCGAACCCCTTCTCGAatgtattaaatgtaacaGGTCATATTCCAGTAAAAAGTCATTAGACAGACATGTTTTGACTCACAAGAACGACAAATTTAAATGTGAGAAGTGTGAGAAACAATTCCTGAGACAGGACAAATTGTTGGAACATGGTAAATTACATGAATCTAAGGAAAAGCCTAAGTCCGTAGATTGTAACATTTGCAATAAAAGTTTTAGAAAGCTAGATACCATGGTTAGACATTTGAACGTACATAAAAAGGCAAACCCGAAGGaagtattttctattttaaaagaactgagagaaaggagaaaacAGGAAAACGGTGAAGTGTGTTCCGACCCAGAAAAGCATTCGACAAAGGATGAGAATATTCTAAAGAAAGAAACTCGTCGCGAAGTCGAAGACAAGAGTTTCGAGAAGAATTTTCCGAAGAAGgttcccgaaatttcgaatgattcCAATCACAACCAGGAGGCACCTAATTCCGAAACCGATATCAGCATCGACACCGATTCCTTCAACTACGTTCCACTGTATCGATGTCAACAGTGCACAAAATATTATACCTCTGAGAAATCATTGCAGCGGCACGTGTTGATACACGACGAAAAGAAATATGTCTGCAATGTGTGCAATATGAAGTTTTTTAGACAGGATCGGTTAAAGAGTCACAAGCAGCGACACGGTCACGACGAATACACAGAGTGCACGGAATTTGAAAAACCTGCCGACGATAAATCCGCGATCAAGTTGATAAACAGCTGGATAAGGGAAGAATTGGACTCGGACAACGAAGGTAAAGGGTTTTCTTGTCACATCTGCGGTAAATCTTACGTTACAAGGAAGTCGTTGATAAAGCACAGAGCAAACGCTCACGCGTCACCCGAGAGTCCCTGCGAGGCTTGTGGAGAGGTTTGCAGCTGTAACGACAAGAAGATTCCCGATGGAGGTTCCGAGAAGGCGAAGCCCTTCTCATGCGACGAATGCAATAAATCCTTTGAAAAGGAATCGAAACTACAAAAACACACAAGAATCCACGAGCGGGCGAAGGAGCAAGAGGACTCCAATTTCAAGCGATTCCTGTGTCACATCTGCAGTAAAACCTTCAGACAGAACACCGGCCTAATGTTCCACATGAGGACGCACACCGGTTACAAGCCACACGTGTGCAAGTATTGCGGCCGAGGGTTCACTTCTAACTCTAACTGTATCAACCACGAGCGGACGCATACAGGGGACCGGCCATTCGTCTGCCACTTCTGCAGCGCGGCTTTCGCAAAGTCCTGCACCCTGAAAGCACACATCACGACCCACACCGGCGAAGCGAATTACCATTGCAAAACGTGCGGGAAATCTTTCAGACGATTGAAGTATCTGAAGGAGCACAAGTTCACGCACACCGGGGAGAAACCCTACGCCTGTAAAATTTGCGGAACGGCTTACAGCCATTCGGGGAGTCTCTTCGTTCACGAGAAGAAGTGCAAGGCGCAGTACAGTAGCTATCAGCCCGTGCCTGGGCAAACTGGTCACGATACGCAGAACTATTGCCAGTCTCATACCGCGATCGTTGCGAGCCCCGTCGTGGCTCCTATACTTTCGAACGTACCCCCGTCCCATCGCGTAGGTAACGCAAATAACGTACTAGGCGTTCAAACGAACAAAACCTATGTAGATAACGTGCAAAGGATGAACACCCATGCGGTAGCTGCAGCTACCGTTGGCAGTCCTAGTTTGCACGTGCACTCTGGCGATGACGTTTCCGATATGGCCTCGGCCGTCAGGAGTTTCGCCATCGTCGGTCAGATATTTCATTCCTAG
- Protein Sequence
- MKIKMERKSLPADPEGIDRLCRVCLSRKKNNLSIFRINADDPERSSNLNLSEKLRVCGGIQILKDDGLPDGICFDCISKINLAHKLREQCQWADEKLRKLYGIPIDAHRSDRQKDQWSQTEPFSELEGVKMEHPITSRNKDAVSDIDSNSDTAEKTFSPFPYGKHDELEEKIPLFVVQKKLRVQMKIRRMLMRKEILKTRRISMFKRITSMENLKNSKERQRQFIKKNVNAKHEFLDQNMTPIRNNLRRRPKRESNHRTEPLLECIKCNRSYSSKKSLDRHVLTHKNDKFKCEKCEKQFLRQDKLLEHGKLHESKEKPKSVDCNICNKSFRKLDTMVRHLNVHKKANPKEVFSILKELRERRKQENGEVCSDPEKHSTKDENILKKETRREVEDKSFEKNFPKKVPEISNDSNHNQEAPNSETDISIDTDSFNYVPLYRCQQCTKYYTSEKSLQRHVLIHDEKKYVCNVCNMKFFRQDRLKSHKQRHGHDEYTECTEFEKPADDKSAIKLINSWIREELDSDNEGKGFSCHICGKSYVTRKSLIKHRANAHASPESPCEACGEVCSCNDKKIPDGGSEKAKPFSCDECNKSFEKESKLQKHTRIHERAKEQEDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHKFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSSYQPVPGQTGHDTQNYCQSHTAIVASPVVAPILSNVPPSHRVGNANNVLGVQTNKTYVDNVQRMNTHAVAAATVGSPSLHVHSGDDVSDMASAVRSFAIVGQIFHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -