Oabi008170.1
Basic Information
- Insect
- Orussus abietinus
- Gene Symbol
- -
- Assembly
- GCA_000612105.2
- Location
- NW:44473-49727[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.14 7.5 6.3 0.5 2 23 303 324 302 324 0.93 2 15 0.0031 0.17 11.5 0.3 1 23 332 355 332 355 0.92 3 15 0.0001 0.0054 16.2 2.2 1 22 361 382 361 385 0.91 4 15 0.0055 0.3 10.8 2.2 1 23 462 484 462 484 0.94 5 15 0.00036 0.019 14.5 1.1 1 23 491 514 491 514 0.92 6 15 0.00014 0.0074 15.8 2.0 1 23 520 542 520 542 0.97 7 15 2.2e-06 0.00012 21.5 0.7 1 23 548 570 548 570 0.99 8 15 3.5e-05 0.0019 17.7 2.6 1 23 576 598 576 598 0.98 9 15 0.54 29 4.5 0.3 1 23 611 634 611 634 0.94 10 15 2.8e-05 0.0015 18.0 3.4 1 23 650 673 650 673 0.97 11 15 0.0004 0.022 14.4 1.1 1 23 681 704 681 704 0.97 12 15 0.0022 0.12 12.1 3.5 1 23 710 732 710 732 0.97 13 15 0.00033 0.018 14.6 5.3 1 23 738 760 738 760 0.98 14 15 0.002 0.11 12.2 4.0 1 23 766 789 766 789 0.97 15 15 0.00074 0.039 13.5 0.2 1 23 796 818 796 818 0.97
Sequence Information
- Coding Sequence
- ATGGATGAAAGTTATGAGAAAACATTGTGTCGTTTATGTGGCATCAAACTTGAAAATTCTGATGCTCTGAATATTTTTGAAGATTCCTCAAATCTGTCAGAAAGGATAAACCAGCTGCTGCAGATAATGatatCTCCAGATGATAAATTCTCAAAATGCATATGTTCTACTTGTTACAACAAAGTTAATGTTTTACATTCGTTTTCAAACTTATGTCTGAGTTATGAAAAACAGTTGCATACTACTGCAAAAACAGAAGAATTGAATAATGTAGAAGGTAATAAAATTGAGGAAGAAAACGacttttgtaaaaaattaagcGATGCAGTGTATTTGTGTCCAAACTGTAATGTTAGTCTggttattttattagaaaacaGTCCAGACGGTTGTGAAAGTAATCTACAAATCTCATTAGCAAATGTAGAAGATCTGACCACGACTAATGACATCGTAAAAGATTACCAAGAAAGATTTCAAGAATATGGAAGTGTGAATGGATCTGAAGAAACTGTAGAGGGAATAGCTAAAGTTAACTCAAGGAAACGTGAGTTGATCACATCAGATATAACAGTAGAAGAAAGTAATAATGACGAAGCAATTAATACCGTAGTTGAAATTGATCAAAAGTCCATTCAAGAACACTGTAAAAGTTCAAAAAGGATGCGCTATAAAAAGAATACATTGCAAGTTTTACCTGCCGAACCAAATTTTGCAGAAAATGATGTCAATTCATCTTCCGTTTTAAAACAGGAATCGGCTGATGAAATGCAGCTTGAATTAACATCATTTGATCAGAGTCATGATCAGGTGCAGCAAATCATAAACACAACTgaagaaaatgatgaattaatCGACGCAAATTTAATAGATGACAGCGTCGTTAGTAAATTTGATTCAAAACTGACGTGTGATCTATGTGGAACACGCTATGTCTCACAACTGAAGTACGAGTTCCATATGGAAAGGCACAAGCGAGGATGTATAGATAATTTTACATGTCCCCTTTGCGGAAAAGAGTCAGGCACTGAAAAACTGTTATGGAACCATTACTTTTATATTCACAAGTGCGCACAGCGTTATGTCTGTAAAACTTGTGACAGGATGTATACAAGAttgtcaaaattaaaattacatcAGGATAAGTTTAATCACGAGGGTATAACTGAAATCAGTGTCAATAGGGATACCAACGATATAGTTAGCGAATCGAAAAAGGTATTGGAAGGAGTCACTTCTGCTAACTGCGTGCTCTGTGGAAGCTTAGTTACCGATTTAGATCCAGAAGCGATAAACGATGCCGTTAGTTGTACCGCTTGTGAAGATTATGCGTTTTCATTAATGGTTCATACAGGTGGAAAAGAGGTTGTGTCACGCAGAGAATATCGTTGCTCTCAGTGCTCCAAGAGTTTCGGTCGAAAAGATAGgttggaatttcatgagatGAGGCATAATGAAGATATGAACGAATTTGTCTGTAGCAGTTgtggaaaagaattttccacTGAGCACGCTTTATATGAACATTATCTTTTTGTTCATAAACAGGCTAGACCCCACATGTGCGAATTGTgtggaaaatcatttcagCTCAAAGCTAGATTAAAAGACCATCTACGATCGCACACTGGGGAAAGACCATTCCAGTGTGACGTATGCGGCCAGCGATATGCAACTAATAGTGCATTAAAACTTCATAAAAAGACGCATATTGCTTTTAGACATTTTACATGTCAAATTTGTAACAAGACATAcagaaagaaacaaaatatgaACGAACACCTAGAAAGACATTGGAGAAATGACAGCAGTATATTCTTACCTCAGGCATTCATTTGTCCATTTTGTTCGGAAGGATTGCCAACATATCGTACACTGAAGTTCCATATGATGGAGATGCACAGAGTAGAAAAGGGAGATCCAATATTATCCGATCAGAAACCTTGGTACGAGTGCGAGATATGTCATGAAAAGTTCAAGCATCAAATGTCACTGAAGGCTCACAGAGAGAGAATACACGAAGGAAAAGTAAATCCTTTATTTCAATGCGATATATGCAATGTAACGTATAAGGTCAAGCAACGCCTTgaaaatcatataaaaaataaacatattgGAGAAAGAAGATATAAATGTGCTCAGTGCGGTAAGGGGTTTTGCGAGACTAAATCTTTGCACAGTCATGTTTTACTTCATACTGGTGCAAAGCCGTACATGTGCAAGTATTGTGGCATGTCTTTTAGACGAAAAGATTCTCAAGACCAGCATCATAAAAAGCACGCTGAAGAACAACTTTACAAGTGTAAGGTTTgtgaagaaacattttgtacCATGAATGATCGTAGCAAACACATGAAACAAGAACACGAGAAAGCAGACTCCTCGTTCGCTTGTCCTGATTGTGGAGAACAGTGTTCCGGGCAACGTGAGATTAGAATTCATTTAAACATGCACCTAGGTGAAAAGTTGCAGAAGCTGCAAGAATCATAA
- Protein Sequence
- MDESYEKTLCRLCGIKLENSDALNIFEDSSNLSERINQLLQIMISPDDKFSKCICSTCYNKVNVLHSFSNLCLSYEKQLHTTAKTEELNNVEGNKIEEENDFCKKLSDAVYLCPNCNVSLVILLENSPDGCESNLQISLANVEDLTTTNDIVKDYQERFQEYGSVNGSEETVEGIAKVNSRKRELITSDITVEESNNDEAINTVVEIDQKSIQEHCKSSKRMRYKKNTLQVLPAEPNFAENDVNSSSVLKQESADEMQLELTSFDQSHDQVQQIINTTEENDELIDANLIDDSVVSKFDSKLTCDLCGTRYVSQLKYEFHMERHKRGCIDNFTCPLCGKESGTEKLLWNHYFYIHKCAQRYVCKTCDRMYTRLSKLKLHQDKFNHEGITEISVNRDTNDIVSESKKVLEGVTSANCVLCGSLVTDLDPEAINDAVSCTACEDYAFSLMVHTGGKEVVSRREYRCSQCSKSFGRKDRLEFHEMRHNEDMNEFVCSSCGKEFSTEHALYEHYLFVHKQARPHMCELCGKSFQLKARLKDHLRSHTGERPFQCDVCGQRYATNSALKLHKKTHIAFRHFTCQICNKTYRKKQNMNEHLERHWRNDSSIFLPQAFICPFCSEGLPTYRTLKFHMMEMHRVEKGDPILSDQKPWYECEICHEKFKHQMSLKAHRERIHEGKVNPLFQCDICNVTYKVKQRLENHIKNKHIGERRYKCAQCGKGFCETKSLHSHVLLHTGAKPYMCKYCGMSFRRKDSQDQHHKKHAEEQLYKCKVCEETFCTMNDRSKHMKQEHEKADSSFACPDCGEQCSGQREIRIHLNMHLGEKLQKLQES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -