Oabi003421.1
Basic Information
- Insect
- Orussus abietinus
- Gene Symbol
- -
- Assembly
- GCA_000612105.2
- Location
- NW:1756122-1766494[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.032 1.7 8.4 1.5 2 23 267 289 267 289 0.94 2 20 0.75 40 4.1 3.4 1 23 384 406 384 406 0.97 3 20 5.7 3.1e+02 1.3 0.5 1 23 455 477 455 477 0.88 4 20 0.0072 0.38 10.4 0.7 1 20 522 541 522 543 0.93 5 20 1.6 84 3.0 2.7 1 20 555 574 555 578 0.73 6 20 0.034 1.8 8.3 3.3 2 23 584 605 583 605 0.95 7 20 0.0054 0.29 10.8 0.1 1 23 657 679 657 679 0.97 8 20 0.00056 0.03 13.9 0.1 1 23 685 707 685 707 0.97 9 20 8.9e-06 0.00047 19.6 1.0 2 23 749 771 749 771 0.94 10 20 0.00017 0.0089 15.6 0.3 2 23 778 800 777 800 0.94 11 20 1.8e-05 0.00099 18.6 2.1 2 23 808 830 807 830 0.96 12 20 0.00043 0.023 14.3 0.2 1 23 838 860 838 860 0.94 13 20 0.43 23 4.8 0.0 2 20 925 943 924 943 0.89 14 20 0.0012 0.063 12.9 0.2 2 23 963 984 962 984 0.96 15 20 7.4e-05 0.0039 16.7 4.9 1 23 998 1020 998 1020 0.97 16 20 0.00015 0.0079 15.7 0.1 1 23 1045 1067 1045 1067 0.96 17 20 0.02 1.1 9.0 0.9 1 23 1116 1139 1116 1139 0.93 18 20 0.00034 0.018 14.6 0.4 1 23 1166 1189 1166 1189 0.93 19 20 0.72 38 4.1 6.3 1 23 1231 1254 1231 1255 0.94 20 20 0.025 1.3 8.7 0.4 2 23 1286 1308 1286 1308 0.94
Sequence Information
- Coding Sequence
- ATGGACGAGGTCGAAGTATTGGCGGACGTGGACAACGTTTGCCGGCTCTGTCTCTCTACGGAAGGACCAAAAGTCTCGATATTCAGCGTTCACGACTCCTCGGTGCCGCTTGCGTCCAAAATCAAGGCGTGTCTGTCGATAGAGGTATTGTCAAATGATAAATTATCGACGCTAATATGTGCCCAGTGTGTCAAGAATGTCAATCATTGGCACAATTACAAGGAGTCATGTCTTCGCTCGCAAGACAAGCTCCAACAGTGGTTGGAAACCCAGATGTACAGATCACCATCGGTTATAACTATAAAACAAGAACCGATGGATGTGGAGTTTTACGAGGATGCCATTGAAATCATTTCAGAATCTCATAATGGTGACTTTGAGAGAgAGGAAGTCGATCTCGAAGGAGATGTGGACGCAATTGAGATACTTAGACACGACGACTCGGTGGAAGAGTTTATAgatgatgacgatgacgaagaaatagaaatagaCATTGGTGGTAACGATTGTACAGCTTCTCCTCCGTCGTTGCCCAAGGAGCCACGAGTCGAACAACAAATTTCCCCCATTGTAATCAAAGATGAACAAGTACAAGATTATGACACCGATTGTAATATAGAAATTGAGTCTGTAACGGGTAGCGAACTGTTGCTTAATCCATTGGCTATGGTTGTGAATAGAAAAGAGCTAGTTATGGAGGCAGATTCGACTGAAAGGTCCAGTGGTCCAAAAGCACCGGCGAAGAAGAAAGCTCGACGTGGACCTCATACGCATTACAGAGGACCTCCGTTTAAACGAAAGTGCTATCAGTGTCAAATTACGTTACGTTCGAAGGGTACTTATATGAGGCATATGACCGAATTCCATGGTACCACCAATCCCCTTCGTTTACCGGCTATGCCAAGTCCTTCTAAAGCTTCGAAATCAAAAGGTCAGAAGACTAAGTTGGACGGGCTGAAGAGACCACAGCACACCAGCACTCCAATTATGGATCAGAAGAGAAACAATCGTGATATGGTAATGAACGGCGACAGAAGTTTGGATGACGAAGAAGAAATGATCGAAGATGTGGAGGACGAGTTAGTCAGCATGGAAAAAGACTCTCCTCTGACAAAAGTTCAAGTTGACATCATCAGTCAACTGAAAACCTTCTCCTGTTACTCCTGTCAATGCGACTTCCCTGACAGGCGAAGTACCCTCAACCACATTCGCCAACACATGCCTGACTTGCGACCGTACACGTGTATCGCCTGCCTTACAGAGTTCCAAGATAGTTCGATGTACCAGTTTCACTGCGGATCTTCCTTCGAATGTGCGATGAAGATCGCATTGGTAGTTCCTAGACAAGGTAGCGAAAAGTACTTTGTTTGTAACATGTGTCTTCGGCCGATGTTAAATAGAAAGGAATTGCTCAGTCACTTGTCAAAGCATTCCGACAAACAGTACGAGCAGTTGACAACTCCGATGAAGGATCCACCCAAGTTAACTCCAATGGTGCCGATGCCGTCAAGAAACGATTCCAACGTTGCGGGGCCTTACAAGAATGGCAATCCTGCATTCAATCACATGTGCAACTTGTGTGGAATGATATATCGACATAAGCCAAACATGCTGAAGCACAGAGAATTATGTAAGGGGCTGCCACCCGATGCCAGGACATCCTACAAGTGTTCCTTCTGCGGAATGACCTTCCTCGTATTCAAGAAATTCTACTCGCACACTACATCGGAGCACAACACTCGTGACCTGCATTGTTCTTGGTGCAGCGCTAAGTTCCGTTCTCCCAGCGATTTCTTGATGCATCACGAGAAACACCGTAGCACCGTAGAAAACATTGACACCGACGACGAAGACTCCGCGAGGAACGAGTCGACCAGGAACAAATCCAGCGGACTGCAAAGCTCTTCCAAAAACTGGGAGACCTTCCACGAGGTCCAATCGAATAAATCCAGGAGCACCTCGCAGAGGTACAACTGTGCCCTCTGCGGTCAGGAGTTCTTCACAAGGGCGGAATTGGGAGAGCACAGGAATTTGCACCTGAAGGTCAAGATCTACTCCTGCGTGATCTGTCGTAGCATGTTTAGCAGCGCAGGTGCCTTGGAGATACACATGAAGGACCACGGTATAGAGGATCCCAACGAGAGGAACGCCAACAGCTCTTGCATCGAGTACGACAGGACGGAGGACGCGAAGCCACGGGTGGAAAACATGAAGCCAGTGTCTAAGACCGAGATACAGAACGCCGAGTGTGAATATTGCGGCAAGGTCTTCTCTAATTATACAAACATGAAGCGGCACAGTAAGAACATTCACGGAGACCGCGAGCGCGTGTATTGCTCGGAGTGTCCGAGAAGCTTCAAGAGGCAAATCATGCTCGACAAGCACGTCAAGGCAGAGCACAAAGTACTGAAAGGTTCGCTGCAGTGTCACCGGTGCAACAAGAAGTTTGCCTTCCAGGCGAACTTAAATCTACATATAAGAAACGTTCACGAGAACTTGAACGAGGGTAGTTTTAAGTGCGACATCTGCGACAGAATTTTCGTGGAGGAACAGTCGTTGAAGACCCACAGGGGTTGGCATTACCGAGCAAATTCTCGTATCAGTGTCGGTCCTTCCATAAGTTTCACTCCTCTCAACAAGTCGGCTCCGGCTACGATAACCAGCCTTGAGAAGGTGTCGCCTTCGAGGAAGACGGCCAATGCCAGGCCAGCCAGAGCTAGGAAATCCTTCCCGAACCCTCCGCCCCAAAAACCGTCGACCGCTCTAAATCTGCAGTGCCAGGTATGCGACGAAAGATTCGGCGACGTCCTGGTGTTGCGAAAGCACCTCTGGGACGTGCACTGTGCCCGTAACAAGCAAGAAAAGGAGTTCCCGACCCAGGAGCTCCAATGCAACCTGTGCACCAACATGTTCCCCGACAAGGAGAGCCTGGAGCAACACGTACAATGGCACAACCAGCACCCGATCCTGAGCTCGGAAACCAAGGCCCAACACAAGTGCGAGACCTGCGGGAAGAACTACAGCACCCGCAAAACCCTGCTGCGCCATCGAAAGCTGCACAAGGCCGTCTTCAAAGTCCCAGGGACCACGAGGAAATTCCAGGCTCTGGCGAAGAAGCCTCCGAGTCCACAGTTTCCTTGCCAGGACTGTCCCAGGGTGCTGGCAACCAAGGCCGCCCTTCAGAGGCACAAGACCATCCATCGATCCTACTCCCCGAAACAGCCGTCCCCCTCGTCGCCATCCAGGAAGCGTTCCGTCAGTCAAGAGTCCACCTCGTTCAACCCGAAGAACAAGAAGATAAAGGTGGACCTCGCGTCCATTCTGCCCGTTCCGGCGGCCCAGAGGTATTCCTGCAAGATCTGCAAAAAGAACTACTCGAGTGGAATAATCCTGCAGAAACATCAAAAGGACGAGCACCGCGGAACTCGTAGCAGAAGCCTGCCATCGGTCCAGGTCATCGAGGAGTGCATGCCCGTGACGAACCTCGACGGTTCCTTCTCCTGCAACGTCTGCGGCAAGACCTTCCCCGGGATTTCCAACGTGCGTCAGCATTTCTCCATCAAGCACAAGCCAGCGGCCATGGCCGCTAACGCATCGCAGTCTCAGTCCAAGCCTAAATCCAGTCCTGCGAAGAGCAACGCCAAGACTTCGAAATCCAGCCTGCCTACCCCCGATGGTGGAGTCATCATGTACTGCTGTGCTTTCTGCGACCGCCACTTCTTCACCAGGGATATGGTCATGGAGCACATCTTCAAGGTGCACCACTCGATCTACCAACCCGATCCGAACAGTCCAGCGCCGTACAGGTGCACCAACATCACCGCATACGTCATCAAGGACGCCATCGACTCGAGATCCTGTCCCGTATGCAAGGTCCGATACCCCAACACCAAGGCTCTCAAGATTCACTACTTCAAGTACCATGATTTGTCGGCTTAA
- Protein Sequence
- MDEVEVLADVDNVCRLCLSTEGPKVSIFSVHDSSVPLASKIKACLSIEVLSNDKLSTLICAQCVKNVNHWHNYKESCLRSQDKLQQWLETQMYRSPSVITIKQEPMDVEFYEDAIEIISESHNGDFEREEVDLEGDVDAIEILRHDDSVEEFIDDDDDEEIEIDIGGNDCTASPPSLPKEPRVEQQISPIVIKDEQVQDYDTDCNIEIESVTGSELLLNPLAMVVNRKELVMEADSTERSSGPKAPAKKKARRGPHTHYRGPPFKRKCYQCQITLRSKGTYMRHMTEFHGTTNPLRLPAMPSPSKASKSKGQKTKLDGLKRPQHTSTPIMDQKRNNRDMVMNGDRSLDDEEEMIEDVEDELVSMEKDSPLTKVQVDIISQLKTFSCYSCQCDFPDRRSTLNHIRQHMPDLRPYTCIACLTEFQDSSMYQFHCGSSFECAMKIALVVPRQGSEKYFVCNMCLRPMLNRKELLSHLSKHSDKQYEQLTTPMKDPPKLTPMVPMPSRNDSNVAGPYKNGNPAFNHMCNLCGMIYRHKPNMLKHRELCKGLPPDARTSYKCSFCGMTFLVFKKFYSHTTSEHNTRDLHCSWCSAKFRSPSDFLMHHEKHRSTVENIDTDDEDSARNESTRNKSSGLQSSSKNWETFHEVQSNKSRSTSQRYNCALCGQEFFTRAELGEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANSSCIEYDRTEDAKPRVENMKPVSKTEIQNAECEYCGKVFSNYTNMKRHSKNIHGDRERVYCSECPRSFKRQIMLDKHVKAEHKVLKGSLQCHRCNKKFAFQANLNLHIRNVHENLNEGSFKCDICDRIFVEEQSLKTHRGWHYRANSRISVGPSISFTPLNKSAPATITSLEKVSPSRKTANARPARARKSFPNPPPQKPSTALNLQCQVCDERFGDVLVLRKHLWDVHCARNKQEKEFPTQELQCNLCTNMFPDKESLEQHVQWHNQHPILSSETKAQHKCETCGKNYSTRKTLLRHRKLHKAVFKVPGTTRKFQALAKKPPSPQFPCQDCPRVLATKAALQRHKTIHRSYSPKQPSPSSPSRKRSVSQESTSFNPKNKKIKVDLASILPVPAAQRYSCKICKKNYSSGIILQKHQKDEHRGTRSRSLPSVQVIEECMPVTNLDGSFSCNVCGKTFPGISNVRQHFSIKHKPAAMAANASQSQSKPKSSPAKSNAKTSKSSLPTPDGGVIMYCCAFCDRHFFTRDMVMEHIFKVHHSIYQPDPNSPAPYRCTNITAYVIKDAIDSRSCPVCKVRYPNTKALKIHYFKYHDLSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -