Basic Information

Insect: Orussus abietinus
Gene Symbol: -
Assembly: GCA_000612105.2
Location: NW:1570375-1575328[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.031 1.6 8.4 0.2 3 21 8 27 6 28 0.85

2 14 1.3 68 3.3 0.0 2 20 34 52 33 54 0.90

3 14 0.39 21 5.0 0.3 1 12 237 248 237 257 0.89

4 14 0.027 1.5 8.6 2.4 1 23 359 381 359 381 0.97

5 14 0.00016 0.0084 15.6 1.2 2 23 385 406 384 406 0.97

6 14 0.00017 0.0089 15.6 2.9 1 23 417 439 417 439 0.98

7 14 0.0012 0.063 12.9 0.7 1 23 458 479 458 479 0.91

8 14 0.00033 0.018 14.6 0.1 2 23 485 506 485 506 0.95

9 14 0.0005 0.027 14.1 5.7 1 23 531 553 531 553 0.99

10 14 1.5e-06 8e-05 22.0 3.7 1 23 559 581 559 581 0.96

11 14 0.00017 0.0092 15.5 4.1 1 23 587 609 587 609 0.97

12 14 1e-06 5.5e-05 22.5 0.8 1 23 615 637 615 637 0.98

13 14 6.6e-05 0.0035 16.8 0.2 1 23 641 663 641 663 0.99

14 14 0.00051 0.027 14.0 0.2 1 23 671 693 671 693 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.031	1.6	8.4	0.2	3	21	8	27	6	28	0.85
2	14	1.3	68	3.3	0.0	2	20	34	52	33	54	0.90
3	14	0.39	21	5.0	0.3	1	12	237	248	237	257	0.89
4	14	0.027	1.5	8.6	2.4	1	23	359	381	359	381	0.97
5	14	0.00016	0.0084	15.6	1.2	2	23	385	406	384	406	0.97
6	14	0.00017	0.0089	15.6	2.9	1	23	417	439	417	439	0.98
7	14	0.0012	0.063	12.9	0.7	1	23	458	479	458	479	0.91
8	14	0.00033	0.018	14.6	0.1	2	23	485	506	485	506	0.95
9	14	0.0005	0.027	14.1	5.7	1	23	531	553	531	553	0.99
10	14	1.5e-06	8e-05	22.0	3.7	1	23	559	581	559	581	0.96
11	14	0.00017	0.0092	15.5	4.1	1	23	587	609	587	609	0.97
12	14	1e-06	5.5e-05	22.5	0.8	1	23	615	637	615	637	0.98
13	14	6.6e-05	0.0035	16.8	0.2	1	23	641	663	641	663	0.99
14	14	0.00051	0.027	14.0	0.2	1	23	671	693	671	693	0.97

Sequence Information

Coding Sequence: ATGGGTTCTTTGCACCTTGTGTGTCCCATGTGCTGTGGCGAGACATTCGACGATTCACAGTCACTAAAGTACCATTTGCTCAGCATGACGGACAATTTGTATTGTCCTGGATGTTCGCAGCGATCAGACTCGGTGATGGCACTGATACAGCATTTGGATCGATGTGGACAGGAGCCTGATCTTAAGCAGTCCTTGGACTCGGAAAACAAGCCACAGGAGGAGCACTCTCTACAGAACGAAAATAATGTTCTTGTGGAGACTCATGTTGGACAAATAGACGAGAGTTTTATAGCAACTGTTAATGAAGAGGGTATCGTCATAGTAGGAGGTCCTCGAACAATAGAGGTTGATGAGAATGGTCaaataaatgtcattgaaaAGATGGATTcaggaaataaagaaaacagTGTAAATGCGGTGACTGTTAAGCAAGTGCAGAAGCAGGTAAACGTTAGTAACAAACAGACTAAAGAGACGCGAGCTTTGGATCCATTGTTCAAGCAAGTACAGAGCATTGAAGCGAAGCCCTGTGAAAGAAACAACATTAGTATCCTGCCTGATGCATCCAACATACTCGATGAAAGTAGCCGTACTCTTATTGGTATTGATGGTACTAATGAAGTACAAGAACTGGATGAGGCCGGATTGCTTCAAGTTAAACAGGAACTCAGCGAGGTAAAAGAAGAACAGATCGATTCAGACTCACTGTATAGCTGTAGTAGTTGTGGAATGAGTTTCAACTCGGTACTCGACCATATCAAGCAATATCACGATGGCCAGGAGGTCGTCCTAGAGATGGCAGAACAACAGTTAGACGATTTCCCAGCGACAGTTCCGTCACCGATACCTGAAGATTTGCCTCCTACGGTTAATGCTCGTCAACGTCAGACGATGAACACGCTGCGTACCGAAGAATGCGTGGATAGCGAAGGAAGGCTTTATACAAGAAAAGTTGTACAAATAGAACGGTTTTGGGATCGTCCTCCAAAGGCACCGATGATAGAAAAGTTCTTTTCTAACGTAGAAGGTGTCAAGGTTAGAGATAAGAACGTAGCTTCGGCTCCAACAAAAGTGTATCGGTGCAACCAGTGTTTCGAACAATTCGACAAGCTCGGAGATTTTCGTGTCCATGCGTGTCTTCATGGAAACAACCAGTGCGATCATTGCGATCAAACGTTTGCAACTATAAAAGCTTTACAGATGCACGCGAAAAGTCACGAGGGCGAATTAGACGGGATGCAAAGAGCGTTCGTTTGCACTTCCTGTGGCACGGAGTTCTCGTCCCATAAAAGCCTACGACTTCACTCTCGGATGCATGCTCCAGTTAGGGCAAGACACGTGGAAGCTCCGGagggaattcaaacttcgtcTTTCACATGTCGAGAATGCGGCAAGACTTTCTCGGAGTCGTACAAGTCGGCGCACATGGCTCTGCATTCTGGCGATTCGGCTACGTGCACGATCTGCAACAGAAAGTTCGATTCGGCTGATAGTCTGGCAATGCATGCCGCGGTTCACACCGAACTGAGTCAAACTCGTTCACCTACACCACCTCCTGGAGACATCGAGTCAAACCAAAATCTGAAACCATATCAATGCCAGCATTGTAGTCGTCGCTTTACCAGACCGCACGAGAAAGTCAAGCACGAGCGCATTCACACCGGCGAGAAGCCCCACGCCTGCGAAGTGTGCGGCAAGACTTTTCGTGTCTCCTATTGCCTGACGCTGCACATGAGAACCCACACCGGGGTTCGACCTTACGCATGCCAACACTGCGGGAAACGTTTCAAGGCATCCTCGGTGTACAACCATCACTTACTGACTCATGGGGAGGAAAGAGCCTACACCTGTCCGTACTGTCCAAAAACCTTCAAGACGAGAGTGCAGCTCGCCGGTCATAAGAATAGTCACACAAAGCCCTTCCGTTGCACCGAGTGCTCCAGACCTTTTGCGTCCTTATACGCTGCTCGAGCTCACATTCAGACGCACAAGAAGGACAACAACCTGAAGTTCAGTTGCTACGTTTGCGGCGCATCCTACGGAAGAGCGTTTGCGCTGAAAGATCACCTGAAACAGCACAGTCAGGATGTTTTGGCTCCTCCGGAACCAGCTAGAGAAGAGGAAGTCCACGAGGGGGAAGATTTCTTTCTGGCCGAGGAGGAAGTCGAGGATGATGAACTCGTCATACCTTCTCCGCTGCCTGTCGCACAGTCTTCGGAAGCTGACGACACCGATTGA
Protein Sequence: MGSLHLVCPMCCGETFDDSQSLKYHLLSMTDNLYCPGCSQRSDSVMALIQHLDRCGQEPDLKQSLDSENKPQEEHSLQNENNVLVETHVGQIDESFIATVNEEGIVIVGGPRTIEVDENGQINVIEKMDSGNKENSVNAVTVKQVQKQVNVSNKQTKETRALDPLFKQVQSIEAKPCERNNISILPDASNILDESSRTLIGIDGTNEVQELDEAGLLQVKQELSEVKEEQIDSDSLYSCSSCGMSFNSVLDHIKQYHDGQEVVLEMAEQQLDDFPATVPSPIPEDLPPTVNARQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRPPKAPMIEKFFSNVEGVKVRDKNVASAPTKVYRCNQCFEQFDKLGDFRVHACLHGNNQCDHCDQTFATIKALQMHAKSHEGELDGMQRAFVCTSCGTEFSSHKSLRLHSRMHAPVRARHVEAPEGIQTSSFTCRECGKTFSESYKSAHMALHSGDSATCTICNRKFDSADSLAMHAAVHTELSQTRSPTPPPGDIESNQNLKPYQCQHCSRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYVCGASYGRAFALKDHLKQHSQDVLAPPEPAREEEVHEGEDFFLAEEEVEDDELVIPSPLPVAQSSEADDTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -