Basic Information

Insect: Orussus abietinus
Gene Symbol: -
Assembly: GCA_000612105.2
Location: NW:4293959-4296733[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0047 0.25 11.0 2.5 1 23 384 406 384 406 0.97

2 9 4.3e-05 0.0023 17.4 5.4 1 20 412 431 412 434 0.95

3 9 2.3e-06 0.00012 21.4 0.8 1 23 440 462 440 462 0.98

4 9 7.3e-05 0.0039 16.7 3.1 1 23 468 490 468 490 0.98

5 9 3.3e-06 0.00018 20.9 0.9 1 23 501 523 501 523 0.98

6 9 8.7e-08 4.6e-06 25.9 0.7 1 23 529 551 529 551 0.99

7 9 5.7e-06 0.00031 20.2 0.6 1 23 557 579 557 579 0.95

8 9 1.4e-05 0.00073 19.0 0.1 1 23 585 607 585 607 0.93

9 9 1e-05 0.00056 19.3 0.3 3 23 615 635 613 635 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0047	0.25	11.0	2.5	1	23	384	406	384	406	0.97
2	9	4.3e-05	0.0023	17.4	5.4	1	20	412	431	412	434	0.95
3	9	2.3e-06	0.00012	21.4	0.8	1	23	440	462	440	462	0.98
4	9	7.3e-05	0.0039	16.7	3.1	1	23	468	490	468	490	0.98
5	9	3.3e-06	0.00018	20.9	0.9	1	23	501	523	501	523	0.98
6	9	8.7e-08	4.6e-06	25.9	0.7	1	23	529	551	529	551	0.99
7	9	5.7e-06	0.00031	20.2	0.6	1	23	557	579	557	579	0.95
8	9	1.4e-05	0.00073	19.0	0.1	1	23	585	607	585	607	0.93
9	9	1e-05	0.00056	19.3	0.3	3	23	615	635	613	635	0.98

Sequence Information

Coding Sequence: ATGAATTGGGAGTTCATTTGTGCGGACATGTGTCGTGCGTGCATGCGAGTGGATGGTATTCTTCTGCCCATGTACGGCGATGATATGATTCGTAAGAAGAATCTTCCTGAAAAACTTACCGAGCTAACATCCGTAGAGATTGATAAGGACGATGGGTTGCCGACGATGCTTTGCACTAAATGTGCATATAGAACCGATGCATTCTATGATTTTAAACAGCAAGTTCTGGCTACAGAGAAAAAGTTACGAAAAATGTTCGAGGGCCAGATTTCTCCTATTATTAAAaatGAAATTGTGGAAAATTATGACGAAGATTCTAAAATAAGTGAATCAACTAtaatagaattaaaatatgataataataatacagtCATTCAGACTGAAAGTGATACAAATGAATTAGTAGATGATACGTTGGCAGAAAATAATGGACAGCTAATAAATCAAGAtagtattaatttaatacagATAAATGAATTAGAAAGTTCAAGTATTGTAGGAGAATTGGGTCATATCATGCCTGAAATGGAACATCTTATTACCGAAGAAAGTAAGGTGGATACCATAAAAAATCAGATACCTGATACAATTACAGAAATTCTACAGTCCCAGAGTTTAGATTATACTATAATGTATATACTGGATAGTGAATTAGAAAATGTCACTACGgatgaaaaattttatttagcTGACAAGAAAAAGATGGATATACAGGAAAACTATGAAAATATGACTAACTGTATCCCAGAAATAACAACTGAAGTTGATGATGACGATAACGATTCAGCCAGTAAAATGTTGACATTTAAGGGTAATCAAGAAAAGTTAAATTTAGATCATAAGTCGTGGCAACCACCCTTCGagtatgaaataattaaaactgaCAAGGACAgtgaaaatgataataaagCGGTGAATGATTGCTATGGGAATAGAAAAGAAGCAGAAAGCGAAGGTAGTGATTCCGATTATTTTGCCGATAAGGATAATATTTTGGGTAGTTTGAACGACACCATTACTAAAATTAAAGAGATCAAGCAAGATGGCAACGTTTTGCAATATCAGTGTACATTATGTTTGCAAAATTATGACGAGTTGACAGGTGTCTTGATCCATACCGTAGATAATCATGTACCGGCAGGTGGACCGTTCTTTTGTGTAGTCTGTGAAAAAGACTGTGAAAGTCTTCGGCAGTTGAAAACACATGTCAAAACTCATACTGGACAGTTTCCATATACATGTTTCATTTGTAATAAATCTTTTTCcatgaagaaatatttaaaaagacaCATGATTTGCCATAGTGATTTTCCGAGGCATCGGTGTCCTAAGTGTGGCGTACGATTTAAAGTCAAGTCTGAATTAGAAGCACACGTTACAACTCATATTCACGGCGCACCATATTCTTGCAGTCAATGTCCTCGATTATTTAATCATAAAGGTAATTACAAGCGACACTTGATTTCGCATTTAGATCCACAAGGTCTCCATCTGCCTAAATATCCATGCAAAGTCTGTGGGAAACGGTTCCTTAATAATCGTACTCTAATGACTCATATGCGAGTCCACACTGGCGAGAAACCATTTAAATGCGAGGTGTGTAGTAGATCATTCTCACAACAGGGAAATCTTTTGAATCATTTGAGAATTCATTCAAATCCTCGTAGTTATACTTGTGAAGTATGTGGCAAACGCTTTAACCAAAGAGCCACGTTACGAGACCACAGTTTACTCCATACCGGTGAAAAGCCTTATGTCTGTAACGTCTGTGGTGCAGCGTTCACATTTAGTGCTGCTTTACGTAGGCATATGTGGACACATGCCAGCGATAAACCTTTTGGTTGCGAGATCTGTGATTCTCGATTTATTGGTAAATATGATCTAAAGCGCCACATGAGAGTGCACAATGATAGACCTAGAGTCAAGGGTAGAAAAAATGTAGTAAAACAGGAAGAAACTGTCAATGAAGAATCCATCGATCAAATCGTTGAATTACAAGTTGAAAATTCAGAGATGGAAACGATATTAATCGAGCAGGTTTTGCCTGATCAGGATGTTTCGCGAACACTTCCACAGGAGGAgtccgaaaaagaaaatgtggaTGCACTATTTACTCTTATACACTACGATTAA
Protein Sequence: MNWEFICADMCRACMRVDGILLPMYGDDMIRKKNLPEKLTELTSVEIDKDDGLPTMLCTKCAYRTDAFYDFKQQVLATEKKLRKMFEGQISPIIKNEIVENYDEDSKISESTIIELKYDNNNTVIQTESDTNELVDDTLAENNGQLINQDSINLIQINELESSSIVGELGHIMPEMEHLITEESKVDTIKNQIPDTITEILQSQSLDYTIMYILDSELENVTTDEKFYLADKKKMDIQENYENMTNCIPEITTEVDDDDNDSASKMLTFKGNQEKLNLDHKSWQPPFEYEIIKTDKDSENDNKAVNDCYGNRKEAESEGSDSDYFADKDNILGSLNDTITKIKEIKQDGNVLQYQCTLCLQNYDELTGVLIHTVDNHVPAGGPFFCVVCEKDCESLRQLKTHVKTHTGQFPYTCFICNKSFSMKKYLKRHMICHSDFPRHRCPKCGVRFKVKSELEAHVTTHIHGAPYSCSQCPRLFNHKGNYKRHLISHLDPQGLHLPKYPCKVCGKRFLNNRTLMTHMRVHTGEKPFKCEVCSRSFSQQGNLLNHLRIHSNPRSYTCEVCGKRFNQRATLRDHSLLHTGEKPYVCNVCGAAFTFSAALRRHMWTHASDKPFGCEICDSRFIGKYDLKRHMRVHNDRPRVKGRKNVVKQEETVNEESIDQIVELQVENSEMETILIEQVLPDQDVSRTLPQEESEKENVDALFTLIHYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -