Oabi006993.1
Basic Information
- Insect
- Orussus abietinus
- Gene Symbol
- -
- Assembly
- GCA_000612105.2
- Location
- NW:615893-621186[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0034 0.18 11.5 0.9 1 23 99 121 99 121 0.98 2 13 4.3e-06 0.00023 20.6 0.3 1 23 159 182 159 182 0.98 3 13 7e-06 0.00037 19.9 0.6 2 23 189 210 188 210 0.97 4 13 0.00074 0.039 13.5 5.8 2 23 217 238 216 238 0.94 5 13 6.8e-08 3.6e-06 26.2 0.8 1 23 244 266 244 266 0.98 6 13 0.055 3 7.6 3.8 1 23 309 331 309 331 0.95 7 13 0.43 23 4.8 0.7 2 19 339 356 338 356 0.90 8 13 9.5e-07 5.1e-05 22.6 3.0 1 23 973 995 973 995 0.98 9 13 0.00062 0.033 13.8 1.0 1 23 1002 1025 1002 1025 0.96 10 13 2.4e-05 0.0013 18.2 0.1 1 23 1033 1056 1033 1056 0.97 11 13 0.00065 0.035 13.7 10.1 1 23 1062 1084 1062 1084 0.98 12 13 0.0014 0.074 12.7 4.1 1 23 1090 1112 1090 1112 0.98 13 13 5.8e-06 0.00031 20.1 0.4 1 23 1118 1140 1118 1140 0.97
Sequence Information
- Coding Sequence
- atgattttacTCGAGATGGATCAGGAAACTTTGGACGATGTCAGAATATCtactgagaaaaaatttagtctCAGTGATGGGAATTATAATTCCCTTGATTCAAcggatatatattttaaaggaGACACAAATGATATATTATTACAACATGCTGAATACTGGCGGAATACAAATTCGGTATATAATGTTGAAAACAATTTGGAAATGGAAGAGATATTTAAAGGATCTGGTGTCCTACGTAAAACATGTACAGATGTCACCCAAGTTTCTCCAGTAATGGAGAAgtctaataattttgtttgttcCGTTTGTGGTGACTGTTTTCCTAGCGAGAAACAATTTTATGGGCATTTACGAATCCATACAGGAGAAGTTCTTTGGCATTGCACTTTATGTCCTGAATCTAATAACAGATTTGAGTCTCAGTCTCGACTTAGAATTCATGAGAACTTATGTCATACAGTTGTGAGGCCTTTCAAATGTGAACAGTGCGGCTTAGTATTTGATCGAGCTTCTCAACTTGATTATCATCAACGTAGCGTGCACTTGGGGGAAAAATCACAAGTGTGTCAGATTTGTGGGAAGGGTTTTTTTCGTAGAACGGATTTGCGCACACATTTGAATATTCATCTAGGTACAAATCTCTGTATGTGTGAAATTTgtggaagaaaattcaatcaTGTGTCAAATCTTATTAGACATTGCAGAATTCATGCAGGTATAAAACCATATCCTTGTACAATTTGTGGTAAAAGATTTACACAGATCAGTTCACTTGCGAGACATAAAAGGACTCACAATCGTTCAAATCATCATACTGAAAGATCGGGAAGTCCAAATGAAGGAAGGGCtgaattaaatgataatttgaAGGGGTCTGGCGAAAGTGCAAATACTGGTGGACAAAAAGTTATGAAACGCCATCACTACTGTAAAATTTGTGGAGAGAGCTTCCAGTTTGTACTTCTTCTTCGGCAACATGAAAAACATCACTTAGAAAATATACACAAGTTAGAGTGTAAGAGCTGCAGAAAGaaattttcaaaattagaGGAAATTAAGGATCACTGTTGCCAAGAGTATGAGAATGCACCATTTTTGGAAAAGGATGGCACGGACTTGTTtaataatatagaaaaaataaacaacaatgcacAAGAAATTGTGCATTGCAATCAGAATTCCACGATGCATGTAAATAATGTAACTGACAATATGGACCACAATAACTTTATAAAAAGCAAAGATGCAAAACGTGCTCAATCTATAGAAGCGGTTGTTTATATGACATCTGAACAgCTTGCAAACATCAGTTTGGAGCATGGCGAAGATACTTCAGGCCATATTTTAAGCGAACACTTTTTGGAGATTGCTGGGAAAATAGGAAACATGGGTCCAGATCGAGATATTGGactaaatatttcagatatacTAAATACTTACGAATCTGAAGAGAGCGAGCCTGGTGATTTAAAACTAAAGTCTTCAAAAATTCATGGAGTATTatctttaaagaaaaatgacacAGCAGAtggaaacaattttatttacgtACAAGCCTCAGAACAAGATGTATTTGAAGTAATGACTGGAGATAATAATGTAATAGATGAACTTACTTCAGGTTTTAGTGCCAAAAAGTTCCAAAAAAACCGAATAAGTAATCTGGAGGACTCGTGTTCAGTAATGTCACACTCTGAATCATTGAATGTACATTCCAGTGAACCAAATTTGGAGATGCTTCCATACGATGGATCACAGTTAAAACTGGCAACTGGTGACATAAGGCATGAACGACTAGATCAATGTAATAAAATGTTGAACATAAATGGTGAACAGTTTTATGTTGAGATTTGTGATCCCGATCATTTAAAGCACTGCAGTTTGCAAGATTTAGAACTCCAAGAAAGTGAAACCGTTCCTTACATGCAACATGATTTTAAAGATTTTCAGAGTGATTCTCGATATTTGCAAACTGATACAAATACTAATCGACTGTTAGAAGCTGCATTTCAAAAAGATCATACATCAGAGACTGAAAAAGTACACAAGGAACTAGATGATTTGGTTGGTGATGGAAGTACCATTGCGAGTAATTCTGAACCAACATTACGTTTAGTACAAACTGATACAGGACAGCAATTTTACGAacttgttattaataatatactaGATAGAACACAAAGTGACCATAGCTTAAAAGATGCCGAGCATTCAAAAGATATGGAAGACAAAATGAGTCATCATGGAAATTCTCACTGTGTAACCAATGACCAATTTCTGGACCTTGTCAAAGATAATTCTCTGGAGACCAAAGATGGTGAACTACAAGAATTTGCTCAATTAGACGATAAAATTACTTCTTCTGACATGCAAGATTTTGTTGTTTCGACTACAAGTGACGgtgatcattttttaaatttaaattataaaaaatccaatttcgaAGACTTTGTAAAAGCTCCTTTTGACGGTAGTGCGGAAAAAATTTTCGAGTTCGTGGATAATGCTGAAAATGTTGGAGAGATTGGCACAGAAAAACATTCGGATGGAGAAGCACCAATGGTTCGCCTTGTGCAAAACGAAGAAGGGGAACAATTTTTTGAATTGATTCGGGACTCTTCGGACTTGCATAAAACCCACAATATGGAATTCCAATCCGATAAGCTTGCGAATCAgtctacaaatatttcaagagAACAAAGTGGACGAAAATCAGACACGGCAAATTGTTTGGGAAGCAGTCCGGAACTTGATACGATTACAACTTTACATTCGATTATGCCAACTAATGAAGGAAgtccaaaaagaaaagagattgCTTCGGTCAGTTTGGGTGTAGACTCTTTGACGAATGATTTAATGGAAGCAAAAGAGCAGTCGTCTGTCCCAAATGCAGGAGTACCCGTGAAAAAGTTTCAGTGTACTGTATGCACAAAATCATTTTCCACTAGATACAACTTTAAACAGCATATAGGCACTCACTTCACAGATCAACAAAAATTTCACTGCAAAGAATGTGGAATTCAATTTGCTTGGAAATCAACCCTGAATAAACATATTGCTATGTATCATCGACCCGATGGACCACAGAAGTTTGTTTGTGAAATTTGCCCGAAGGTTTATTCTACTCTATCTCAAGTAAATGAACACGTAAAGCGAGACCATTTGAAGCAACGAAACCATGTGTGTTCACATTGTGGCAAATGTTTCTTCAAAAAGTTCGATCTTAAAACTCACAGCCGTACGCATACTAACGAGAGACCGTATGTATGTCGAGCCTGCGGAAAGGGATTTCACCATCAGAGTCACATAATTCGACATGAGCGAATACATTCGGGGGAAAAACCTTACGCCTGCGACATTTGCCAAAGAACATTTGCGCAACCAGGATCACTAAGAACGCATAAACAAAAACACCGAGAAGCTGACATGGACATCTTAGATCGATTAGACGAGGACGATCCTTTGACGTTTTCTACTATTTAA
- Protein Sequence
- MILLEMDQETLDDVRISTEKKFSLSDGNYNSLDSTDIYFKGDTNDILLQHAEYWRNTNSVYNVENNLEMEEIFKGSGVLRKTCTDVTQVSPVMEKSNNFVCSVCGDCFPSEKQFYGHLRIHTGEVLWHCTLCPESNNRFESQSRLRIHENLCHTVVRPFKCEQCGLVFDRASQLDYHQRSVHLGEKSQVCQICGKGFFRRTDLRTHLNIHLGTNLCMCEICGRKFNHVSNLIRHCRIHAGIKPYPCTICGKRFTQISSLARHKRTHNRSNHHTERSGSPNEGRAELNDNLKGSGESANTGGQKVMKRHHYCKICGESFQFVLLLRQHEKHHLENIHKLECKSCRKKFSKLEEIKDHCCQEYENAPFLEKDGTDLFNNIEKINNNAQEIVHCNQNSTMHVNNVTDNMDHNNFIKSKDAKRAQSIEAVVYMTSEQLANISLEHGEDTSGHILSEHFLEIAGKIGNMGPDRDIGLNISDILNTYESEESEPGDLKLKSSKIHGVLSLKKNDTADGNNFIYVQASEQDVFEVMTGDNNVIDELTSGFSAKKFQKNRISNLEDSCSVMSHSESLNVHSSEPNLEMLPYDGSQLKLATGDIRHERLDQCNKMLNINGEQFYVEICDPDHLKHCSLQDLELQESETVPYMQHDFKDFQSDSRYLQTDTNTNRLLEAAFQKDHTSETEKVHKELDDLVGDGSTIASNSEPTLRLVQTDTGQQFYELVINNILDRTQSDHSLKDAEHSKDMEDKMSHHGNSHCVTNDQFLDLVKDNSLETKDGELQEFAQLDDKITSSDMQDFVVSTTSDGDHFLNLNYKKSNFEDFVKAPFDGSAEKIFEFVDNAENVGEIGTEKHSDGEAPMVRLVQNEEGEQFFELIRDSSDLHKTHNMEFQSDKLANQSTNISREQSGRKSDTANCLGSSPELDTITTLHSIMPTNEGSPKRKEIASVSLGVDSLTNDLMEAKEQSSVPNAGVPVKKFQCTVCTKSFSTRYNFKQHIGTHFTDQQKFHCKECGIQFAWKSTLNKHIAMYHRPDGPQKFVCEICPKVYSTLSQVNEHVKRDHLKQRNHVCSHCGKCFFKKFDLKTHSRTHTNERPYVCRACGKGFHHQSHIIRHERIHSGEKPYACDICQRTFAQPGSLRTHKQKHREADMDILDRLDEDDPLTFSTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -