Oabi003295.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orussus abietinus
Gene Symbol
-
Assembly
GCA_000612105.2
Location
NW:375791-379544[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00046 0.024 14.2 2.4 2 23 366 387 365 387 0.97
2 11 1.9e-05 0.001 18.5 0.9 1 23 395 418 395 418 0.97
3 11 0.00038 0.02 14.4 2.9 1 23 466 488 466 488 0.98
4 11 2.6e-06 0.00014 21.3 1.2 2 23 535 556 534 556 0.96
5 11 1e-05 0.00053 19.4 1.1 1 23 561 584 561 584 0.95
6 11 5.8e-05 0.0031 17.0 0.1 1 23 621 643 621 643 0.97
7 11 2.7e-07 1.4e-05 24.4 1.4 1 23 653 675 653 675 0.96
8 11 1.1e-06 5.8e-05 22.4 1.2 1 23 681 703 681 703 0.99
9 11 9.9e-06 0.00053 19.4 0.2 1 23 709 731 709 731 0.98
10 11 0.0017 0.091 12.4 4.2 1 23 737 759 737 759 0.98
11 11 0.00037 0.02 14.5 0.3 1 21 765 785 765 786 0.94

Sequence Information

Coding Sequence
ATGGAAGTGGCGAACGTCGAGGAAGCAGGTGGAACTTTCGAACGGTCCGTTATTAGGAATATCGGAGAAGAATGCCGAATCTGCTTGAAAAAATCCACACATCTCTGGAAGCTCTTTCAAAACGGGGAAGAAGCCCCACGGAAAATAATGGCGTTTGCTGCCGTCCAGGTGGAAGAGGGAGATGGCCTGCCATCAACGATTTGTTCTATATGTCGCAAGCTTGTCGACATGTCCTATAAGTTTAAGTGCCAGGTAGAAAAATCAGATGCAACCTTACGTGAGATTCTTGCTCTAAAGGCTTTAGAGGACCGGAAGGAGGCAAATCTATCTTTAAGCGAGTCTGTCAATGCAGCCATTACGGAAGCTATAGCTGACGAACTACCACATGCAGAGATTGAACGCACCGCCAAAGGTAGTGTTGGAATCTCTTCAGGTGTCAACATGGAAGCCAGCGCTAGTTCTAACGTTTGGTCAATCGAACAGCTAACTGTGCAGAATCTTACTAATAATCAGGATagtgttatattttcaatgaacAATGGTTGTTCCGGAAGGGACGTGCAAAATCAAAGTATCGATACATCTACCTACCCAAGTGACAATATCAGAGAAATGAAACATACCGATTTCAGGGAAGTCACGCAAACAGAGAGTATTAATGTTTATTCTGGTAATTTAAATGCTCGGactgaaaatatagaaatcTCTGGTTACGAAAGCAATCACAGTGCTCGTGAGGTGAAGGAATCGGAATTCAAAGAGGTGGAAGATACAGCGGTCACTCATGTCTTTACGGAAACTTTGAATCAATTGGAAAGTAAAGAAAGGGATGAGCTTATTAAGCAGGAAGAGTTGTCCCTGCCGGAGGAGAACGAATTCTCTGAAATAGAGGATAATTCTATAGAACATTTACATACTTTTGACGAGCACAATGTTAAGATCGAAGTTAGGAATGATTTGTGTTCAGGGATTGATGACGAAGCTAAACATAGAAGAGTGACTGTGAAGAGTAGAACCTCTGtccagagggagagggaagaagACAACAACAGTGACGAGGAAGAAAGACCACTTATTAGTAGAACTCAACGACAAAAATGTCAACACTGTATAAAAACGTTTGCAACGAAGTTGGCTCTTCAGAGGCACATGACGGTACACAAACACAAAACTAAACTGCGCTACGTGTGTTACATGTGCGACAAGCAATTCTCTAATGTCTCGAAGCTGAAAGGTCACATTCGCAATAGTCACGACAATGTCAAGAGTGCAGATGAAGGGTCGACCGAAGAAATTCAAGGCAAGCTGCCTGAGGTGCCAAAAGCTTCAGCGGGTCTTGAAAAAGACAATACAGCACAGCTTGAGATTGCCAAGTCTGATAGGAGAAATCTCAAGTTCACCTGTAAAGTCTGCTCGAAACAGTTTGCTTATCAAAAGACTTTTCTGACCCATGCCAAAACTCATCCAGAGTACAAGGAGGAATTGCTAAACGGGAACACTGACAGATCGGCAGGTTTGAACGAGTCTCTGGAAACTCTTAACAGGTTTCCGAGCATTCGGGAGAATGATTCGGAAAATGATGACGTGCTGCCAGATGGTCTTCAGTGCAAGCAGTGCGGGAAATTGTTTGCAACCAAAAGGAATCTCAATAGACACGTCTCGATGCACAGTGGATTAAAGTTCAACTGTTCCACCTGTGGGAAGGAGTTCTCAAGGGCAGATAAACTGAAGGAACATGAGCAGTCGAAGCATAAAGAAGAAATGTTTAGTCCATCGGAAGAAGAGGACGATGACGACATGGACAACGAAAATAGAGCTAATGATGGAATAGACGACAGGAAGAAGGAGAAGAATCGACCGCACCAGTGTGCCCTTTGCCCAAAAGCTTTTGCTCAGCCACAGTCGTTGGCCAACCATGTGGAGAGACACAAGCGAGTGAAGGATACTCAAAAGCGTTTCCTTTGCGAGGTGTGCAGCAAATGCTTCGCTCAGAGTAGCTCCCTCGTAGCCCACATGCGAACTCACACCGGAGTGAAGCCGTATGTCTGCAACATCTGCAGCAGGGCATTCACGAAGAGCACGTACTTGCAATTGCACTTGAGAACTCACAGTGGAGAGAAGCCTTACATTTGTCAGTATTGCAGCAGAGCATTCGCGAGGGCGAACACATTAGCTCGACACATAACGATGCATACTGGGGAGGCCAAGTATCACTGTCAGATCTGCATGAAATCATTCCGAAGGCTGACTTCTCTCAATGAACATACGTATACTCACACTGGTCAAAGACCTTATGCTTGCAAGATTTGTACGAAGAGATACAACAATGCAGGCTCTTTGTACGCCCACACTAAGAAGTGCAAGGCGCAGCAGGTTTCTGGCACAACGACTGGCTATACAATGGTACCAGTGGATAATGGTACCACCGAACAGAATAGTCCGGTGCCTCAGATGTTGATCTATTCCCAAAGAAAACTAGTGGAGGACTCTCCAGTCGGTCAAGTTCCTCCAACGCCACAGTTCATGATAGCCAATGTTCACAGTCAAAAACCTATTTCAGGCAATATCATTCAGCCATTTACTGTCGACGATCCAAACGTTTACGCAACTAGCGCCAAGCAGTTCAAAGGACCTTATTATTCGTTGTATCCAAACATGCAGTGA
Protein Sequence
MEVANVEEAGGTFERSVIRNIGEECRICLKKSTHLWKLFQNGEEAPRKIMAFAAVQVEEGDGLPSTICSICRKLVDMSYKFKCQVEKSDATLREILALKALEDRKEANLSLSESVNAAITEAIADELPHAEIERTAKGSVGISSGVNMEASASSNVWSIEQLTVQNLTNNQDSVIFSMNNGCSGRDVQNQSIDTSTYPSDNIREMKHTDFREVTQTESINVYSGNLNARTENIEISGYESNHSAREVKESEFKEVEDTAVTHVFTETLNQLESKERDELIKQEELSLPEENEFSEIEDNSIEHLHTFDEHNVKIEVRNDLCSGIDDEAKHRRVTVKSRTSVQREREEDNNSDEEERPLISRTQRQKCQHCIKTFATKLALQRHMTVHKHKTKLRYVCYMCDKQFSNVSKLKGHIRNSHDNVKSADEGSTEEIQGKLPEVPKASAGLEKDNTAQLEIAKSDRRNLKFTCKVCSKQFAYQKTFLTHAKTHPEYKEELLNGNTDRSAGLNESLETLNRFPSIRENDSENDDVLPDGLQCKQCGKLFATKRNLNRHVSMHSGLKFNCSTCGKEFSRADKLKEHEQSKHKEEMFSPSEEEDDDDMDNENRANDGIDDRKKEKNRPHQCALCPKAFAQPQSLANHVERHKRVKDTQKRFLCEVCSKCFAQSSSLVAHMRTHTGVKPYVCNICSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICMKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKAQQVSGTTTGYTMVPVDNGTTEQNSPVPQMLIYSQRKLVEDSPVGQVPPTPQFMIANVHSQKPISGNIIQPFTVDDPNVYATSAKQFKGPYYSLYPNMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-