Oabi002178.1
Basic Information
- Insect
- Orussus abietinus
- Gene Symbol
- -
- Assembly
- GCA_000612105.2
- Location
- NW:1862-22868[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 5.5e-06 0.00029 20.2 1.0 1 23 222 244 222 244 0.98 2 31 0.0024 0.13 11.9 1.9 1 23 267 290 267 290 0.96 3 31 0.00012 0.0063 16.0 0.5 2 23 297 319 296 319 0.96 4 31 0.00017 0.0089 15.6 0.5 1 21 339 359 339 360 0.95 5 31 0.00082 0.044 13.4 0.9 2 23 458 479 457 479 0.96 6 31 0.02 1.1 9.0 0.1 1 23 485 508 485 508 0.91 7 31 0.0001 0.0056 16.2 0.1 1 23 575 598 575 598 0.96 8 31 0.0071 0.38 10.4 0.4 1 23 604 627 604 627 0.96 9 31 0.11 5.7 6.7 1.5 1 23 640 662 640 662 0.97 10 31 5.7e-05 0.003 17.0 1.2 3 23 707 728 707 728 0.97 11 31 0.008 0.43 10.3 0.8 2 23 792 815 791 815 0.93 12 31 2.8 1.5e+02 2.3 0.0 2 23 824 846 824 846 0.84 13 31 0.034 1.8 8.3 0.0 2 23 853 875 852 875 0.95 14 31 1.1e-05 0.00061 19.2 1.2 1 23 883 905 883 905 0.98 15 31 1.1 57 3.6 0.8 2 23 937 960 936 960 0.89 16 31 0.00019 0.0099 15.4 3.3 1 23 963 986 963 986 0.97 17 31 0.026 1.4 8.7 0.9 2 23 993 1015 992 1015 0.95 18 31 0.0029 0.15 11.7 5.1 1 21 1042 1062 1042 1063 0.95 19 31 0.0024 0.13 11.9 1.8 2 23 1077 1098 1076 1099 0.93 20 31 0.39 21 5.0 1.4 1 23 1102 1125 1102 1125 0.94 21 31 0.018 0.96 9.2 2.4 2 23 1132 1155 1131 1155 0.93 22 31 0.85 45 3.9 0.2 2 23 1163 1185 1163 1185 0.95 23 31 2.6 1.4e+02 2.4 0.0 2 23 1192 1214 1191 1214 0.88 24 31 0.14 7.5 6.3 3.1 2 23 1223 1245 1223 1245 0.96 25 31 1.1 61 3.5 0.5 2 23 1251 1273 1251 1273 0.92 26 31 1.2 62 3.5 0.2 1 23 1334 1357 1334 1357 0.95 27 31 0.0024 0.13 11.9 3.0 1 21 1385 1405 1385 1406 0.95 28 31 0.44 23 4.8 1.3 2 23 1507 1529 1506 1529 0.93 29 31 0.2 11 5.8 0.4 2 23 1536 1557 1535 1557 0.96 30 31 0.61 33 4.3 2.5 1 23 1568 1590 1568 1590 0.97 31 31 0.61 32 4.4 0.1 3 19 1599 1615 1599 1618 0.93
Sequence Information
- Coding Sequence
- ATGGAGCCGCGCGACCGCTACCACGAGCTCTGCAGGCTCTGCGCCTCTTACGACGCCGTCAAGATGGATATCTTCGGCCAGGAGGGCCGCAACCGCCAGCTCGTCGACAAGATCGAGACCTGCTTGCCCTTCAAGATCGCCGAGGATGACCGCCTGCCGAAGTGTCTGTGCTACCGGTGCATGTACAACCTGGAGAACTTTTACGACTTCAGGACGGCCTGCGTCAATGCGGTCGCCCTGTTGGAAAGGTGCCTGCCGCCCGACGACACGGTTTCGGAAGATGCGCAGAAGCAACCGGAACAGAGCTCGGAGCTGCGCACCGAGCTGCTCAAGGAGAAGGAAAACATGCCGATACTCATTCCCGAGGCTCCCATAGTGAACCCCAATGCGGCACTAGGGACCCCACCGAGATTGAATTCCGATGGCGAGTCGGAccgcgaggtcgaggaggtcctcgaacAGAGTGGCACGGATGAAGGTGTggacgaccccgaagacccgAAGTCCGACGAGTACGAGATGGACATGGAGACGAATCCTAGCGACTTCCTGGAGATGACGTCGATGGTCACCGAAGACGTGGAGGAGAGCGAACCCGCGACTCCGCAGACCGGACCACAAGAGTCCGGGGTGTTCCAGCACACGATGGAGCAGCACGAGGTGTATGTCTGTTCCCTCTGCAACAAGGCTTTCAGCTCGAAGGGGCACCTTTCCTTGCACGCCAGGATCCACGTGGGTGCCGGAGACGTGATCGGCGAGAAAGTCATCACCGACGACCACACGTCCTACAAGAGACCTTACCAGTGCGACCTCTGCAACAAGTCGTACTCCACGGCGAAGCATCGGTGGGGACACGTCTCGACGACGCATCGGGGTCATCCGGCTGTGACTTGTGGTTATTGCTCGAGGATCTACTCGACGAGGACGAATCTCGAGGAGCACATAAAGTCGCGACACGCGGGTCTGCCGCCACCTCCGGAATTGCAGATGCCTTACGtacagccggagaaccggtaCCAGTGCAAGAACTGCCCGAAGATGTACACCAACGTGACCGACCTCAACAAGCACAGCAGGGTGTGCTCGAGTGAGCGGCGAAAGGACCCGCCGACCAGCAAGACCATCGTCCAGAAGAGCAAGAACCTCGTGGACACGTCCGACTTGTCGAGCCTGGACTCGAACGACGAGAGCAAAGACTACAAGAGCGCCGAGgcgaaactcgcgaagaaTCCTCAGTTGACCATCCTGAAGCAGGCGTTGACCAAAGGGGACAGCTTGAAGCGGGACTTCGAGGACAAAGGCAGAACGAGCGGGAAGCCGAAGAAGGTTGCCAGGACAGAGAGCACCGAAATCGACGGACAGAAGAGGTGGTACTGCGAGACCTGCCCACACTCGTTCACCTCAGTGGAGAGCCTGAAGGAACACGAGCAGACCCACGACGCAGACAAGCCTTACGTTTGTATATTATGCGAAAAGGATTTCGTCCTGAAGTCCTCCCTCAGCAGGCACATTTTGGCGTCTCACGGGGTGGATCCTTCGCCGATAGTAGATAGCGACAAGTGCTTGAAGAAGGTGGTCATGGCGCAAGCCCAAGCTGCTGTAAAAGAAGCTCCTGTTGCCATCAAAGAGTCGGACTCGACATGTTCCCCAGAGACCAATGCGGACAACGAAGAAGAGGATCGGGAAAGCAGCCACGAGAACATGATCGAGATCGAGACGGTATTCGTTTGCGAGATCTGCACGAGAGACTTCAACGACAGAGCGTCTTTGTGGCTGCACATCAGGGCGACCCATAAGGAGTTTGCGGCCTTTGCATGCGGTGTTTGTCTGAAAATCTGCTCCGACAACGCGCAGCTACTAAACCACGTGAACATGTACCATGGAACGTCGAATCTCCTCGTCTCTGAACAAAGAAGGTACAGTTGTACGATATGCGGGAGGCAGCACGACTCCAGAAAGAAGCTGATAACTCATGTCTCGATACACAATGTGGATCCTAGCTACGATCCGGCGAGTTTCGTACAGCTGaacaacaattattataacgAGAGCATGAACAGCAACGACGCGAACGAGCAGACGTTGGATTTCGACGGGGAGGACGGGGAGAAGGTTGGCTGTTATATTTGTTATAAGTCCTTTCCAAACGAGGATCACCTTATACGGCACCAACGAAACGCTCACAAGTCGGAATCGATAGTTCCGATAGGAGACCCTGCCGGCAACGGAAGTGGCTCGGGGGCGAATTCGGGAAATGGAAACCGTGCACAATATCATCTGTTTTTCGTCTGCGAGCTGTGTGGAAGTTCACACCCGAGTAAATGGGAACGATGGCTCCATGTCAGCAGCACTCACAGCAACGAGCCAGCTATCAGGTGCGAGCGAGAAGACTGCGGGAAGATATTCGCGACGAAGTCGCTGCGCAATGAGCACGCCCAGCATCATCTTATCCAAGGAGCGTCTCCGAACACTTGCGAGATCTGTGGGAAGCTGTGGGGCAGTCGAGTGGATTATTGGAAGCATGTAATGGGCGTCCACTCGGATACGGTACCCCTGATCTGTGGGGTGTGCCTCAAGGTGTTCCCCGATGTCCTACAACTGAGTGCCCATGTTAAAACGAACCATTGGCCGCTGACCAACGGCGATTTCAGCTGCGACATCTGCGGTAGGCCGTACTCGAACAAGTCGAAGATGTCGAGGCATCGGAAGATCCACGGGCTGGACGCGGATAGGTTCAGCTACGGCCTCGGCGAGTCTCCGaacgagaccctgaagaccggCAGAGGCGACTCGGCCGAGGGCGAGTTAACTTGCGAGATCTGCGCCGACCTGAAATTCGGGAATCTGGAGGAACTGTGCAACCACAGGCGCAGTACCCACGGCTTGTTCCCCTGCGACCTGTGCAACAAGTGCTACGGTAGGACGTCCCACCTGTGGAAGCACGTGAACCGCGTCCACAAGGGTCACAAGGACGTAACCTGTCGGTACTGCATGAAGACCAGCGCGTCCAAGGACCACCTGGCGACCCACATCGCTAAGATTCACAGGTACGAGCCGGACACAAAGAAAGAGATCCGCGACTCGGCCAGCTTCAAGTCCTTCGCCGGAGAGGACGAGGCTCTTCATCATTGCGAGAAGTGCAACAAGGGCTTCCACAAGCGGTATCTGTTGCGCCGCCACATGAAAGGCTGCCAGAACTATCGAAAAGACCCTGGAGCTTTGCTGACCAGGTGCCGAGCCTGCGAGAGGATCTTCAAGGACCGTGCCAGTCTCCAGAAGCATATCGAGAACCACCACAGTAGCTACACCTGCCACCTCTGCAACGAGACCATCACGTCCAAACTAGGTATCATGACGCACAACCGCGTCAAGCACATGGACCATCCTGATCTGACCTGCGACCATGCCAACTGTAAGAAGCTCTTCCGCACGAAGGAGGACCTGGAGTCGCACAAGAAGGACCACAAGTACCACACCACGCCGAACGTCTGCGACTTTTGCGGCGACACGGTGGAGAACAAACTGAAGCTGAAAATGCACATCCTGTCGCTGCACAGGAACGAGATCGGCGTGTCGTGTGGAGTGTGTCTGATCCCAATGAAGGACCCGAAGGACCTGAAGAAGCACGTGGAGGAGGTACATCGCGGGATCCTGTCCAAGCCGAATACCTGTAAAGTTTGCGGTAAACAATACGCCTCCAAGTGGAAGGCATTCGATCACACCAAGAAGTGCCACGGGAAAGTGTTCAGGACGTGCAAGCAGTGTCTAGCGGTGTTCACCAGCGACGCGGACATACGCCATCACTACGAGCTCGTCCATAATGTCCCGAAGGACCAGCTGGCAGGCTTCGAGTTCCGTCTGGACGTGGGACCCAAGCCCGAGGAGTTCGACCCGGCGGAACTCATGGTCAAGAAAGAGCCGGAGGACCTCGAGTTCGACGAGATGCCCTACGACGAGGACTCGAACGACTCTAAACGCAGGCGGTCCATCAGCGACACCTTCGACTGCGAGATGTGTCCCGGGATCTTCTTGAACCACGAGACCCTGGCCGAGCATTATCGGAATGTCCACAGCACCGACCCCTCCAGGATGTTCAAGAAGATGAAGCTGGACGGCAGCAACGCCCATAGGAAGATGCGCGACCGGGAGAACTTCGAGTGCAAGAACTGCAAGCGGCAGTTCTGCACGAAGACGCTCTTCTGGAACCACATCAACGTCTGCACCAGGCGGACCGGAAAGGACGAGGCGTGCGGCGCGTTCCCGGGCTCGATCTTGGAATCTCACCTGAAGAACAACAACCAAATCAAGAAGGAGGAATTGGAGCCCATGGAGAACGAGGCTAACCTGAACATACCGGACTTCAACCTCTTCGAGGACATCAACCTGCAATTGTCTGGTCAGAAGCCGGTGCCAAATCTCATGCCTCTCGCCCAGATGGGCGGGAagtcgtcttcagggtcgaagTGCTCGAGGAAGGACTCGCGGAAGGTCTACGACGAGTCGACTAACACCGAGTGCGCCTGCGAGGTCTGCGGGAAACAATGGCCGGCGAAGAAACACCTGTGGCAGCACCTGATCCGCTTCCATCGAGCCGAGGCTGCCGTCACCTGCGGGGTTTGCCTGAAGCTCTGCAAGACCTACGAGGACCTCGCCGACCATCTCAAGGCGCACGAGGCCATCCTGAAGTGCGAGGGCAACAACTTCACCTGCAAGACCTGCGGCAGGTACCACAATGCTCGCAGCAAACTGTTGCTCCACATGAGCATCCATATCAACCTCAACGGAAACGCCTGGTGCCGAGGGTGCCAACAGAGCTTCGAGAGCGAGGAGAAGCTCGCCGAACATGCCACCAGCTGCACCATGCAGCAAGCTGAATTCGAGGAACAGAGCAACGACATGGAGGGCAGCTCGAAGAGGGAGAACGAGAATGACGGGAAGAGCAGCGTCGCGGGTGACGAGAACTCATTAACGGGCGAGGTCGAAGAGGTCGAGTTCGAGTCCGAAGCCGAGGGCGACGGGTCCGACCAGGACGGCAGTAACTCGGAGAACAGCGACGACTCGGACAGCATGAGCGACGCGAGTTCcagcgacgacgacgacgatgacgacgacgaggacgagaacAGAAACGAGAACGGGGCAGAGAACGACGAGGAAGCTGAGTCGAGGTCGAATAGCAGGGCGAGCGAAAACAGCAACAACAGTAACAACAGTAACAACAGTAACAACAGCgacaacagcaacagcagcaacagcagtaACAGCGAGGATGAGGACTCGAgcgacctcgaagaaggcGAGGgcagcgacgacgacgacgatgaggatgaggaagaggacgacgaCAGCGTCACTAAGGACCCCGAGGAGCAGGAGGTCAGCCAGGAGAGGACCTTGGACAGGGAAGAGTATAAGACCgagctcgaggtcgaggacgactTCGAGGCGGAGGAGGTGAAGATGGAGGTCAACAGGGTGAAGTATGATGAGACCTCGCTGAACGTCAGAGGAGGAAAGTACTCAGGGGATCACAGAGGGCAGTTCGAGGCGTCGTCGAGATCGCACGTCAAGCCGCAAGCCATGGACTACtcggacgaggacgaggacgatgaTGGACCTCCCATACTGAGTCCCATGATGCCGTTGAATTCGAGAGAGGCGGCAGACCGGGACGGCGACGCGCGCCAGGGGCTCAGTCCGATGGTTTCGATGGCGGTGAAGATGGAgcgcgaggtcgaggtcggcgaGCTGGACGAAATCAGGCACGAGATCGCTAGGGGTCGCTCGGCCTCGTCGACGAGTTCTCCCCAGTTCTACCAGGACTCGATGAGCGAGAAGGGGTCGAAGGCGAGCGCCAGCGTGCTGGCGGGGATCCTGGAATCCGGCTCCGAGGAAggagaggacgaggtcgaCAGCAGGCTaggcgaggacgaggacgccgaggagggGCAGGAGGAgcccgaggaagaggtcgaGGACGCCGGGGGCAAGGTCGACTACACCGGGAGGTTCGGGAACGAGGGCGACTCCGCCGAGGGCCAAGTCTCTCGCATGGAGGACTCCGGCGACGAGACCTTCGGCGAGCGCTCCGACGCCGAGGAGATCGATgccgtcgaggtcgaggtcgaagcCGAGGCCGGCATGCAGATCCACGACCTCAACGGCACCGTCCTCATGGTGGCTAACGACTCGGACGGCAACCAGATCTTGATACAGCAGAACGTCGGCGACCTCGCCGGGGAGGCCGACCAGATGGTCACCCAGTTCGTCTACCAGGATGGCCAAAACTATGGACTCGGCTACAGGATGGCGGCGACGCATGCGCAGGGCGCGCCCATGCATTCCGTGGAGATTCGCGAGATCACCGACGAGAACGAGGACGTCTTCGGGGACGAGGAGGTCGCCGGCGCCCAGATGGacggagacctcgaagaggacgacgaggacgaggagtcCAAGCTGGGCCCTGGCAACGAGCAGGGCCTCGAGCTCGAGGCTCAGTCTATGGAGGAGTGGACCGATGGGGATTTGAGCGCGAGTGCCAAAGACGAAGTGTCAAGGACGTAA
- Protein Sequence
- MEPRDRYHELCRLCASYDAVKMDIFGQEGRNRQLVDKIETCLPFKIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPPDDTVSEDAQKQPEQSSELRTELLKEKENMPILIPEAPIVNPNAALGTPPRLNSDGESDREVEEVLEQSGTDEGVDDPEDPKSDEYEMDMETNPSDFLEMTSMVTEDVEESEPATPQTGPQESGVFQHTMEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPPPPELQMPYVQPENRYQCKNCPKMYTNVTDLNKHSRVCSSERRKDPPTSKTIVQKSKNLVDTSDLSSLDSNDESKDYKSAEAKLAKNPQLTILKQALTKGDSLKRDFEDKGRTSGKPKKVARTESTEIDGQKRWYCETCPHSFTSVESLKEHEQTHDADKPYVCILCEKDFVLKSSLSRHILASHGVDPSPIVDSDKCLKKVVMAQAQAAVKEAPVAIKESDSTCSPETNADNEEEDRESSHENMIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNAQLLNHVNMYHGTSNLLVSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPSYDPASFVQLNNNYYNESMNSNDANEQTLDFDGEDGEKVGCYICYKSFPNEDHLIRHQRNAHKSESIVPIGDPAGNGSGSGANSGNGNRAQYHLFFVCELCGSSHPSKWERWLHVSSTHSNEPAIRCEREDCGKIFATKSLRNEHAQHHLIQGASPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVLQLSAHVKTNHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDADRFSYGLGESPNETLKTGRGDSAEGELTCEICADLKFGNLEELCNHRRSTHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHKDVTCRYCMKTSASKDHLATHIAKIHRYEPDTKKEIRDSASFKSFAGEDEALHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCDHANCKKLFRTKEDLESHKKDHKYHTTPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEEVHRGILSKPNTCKVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDADIRHHYELVHNVPKDQLAGFEFRLDVGPKPEEFDPAELMVKKEPEDLEFDEMPYDEDSNDSKRRRSISDTFDCEMCPGIFLNHETLAEHYRNVHSTDPSRMFKKMKLDGSNAHRKMRDRENFECKNCKRQFCTKTLFWNHINVCTRRTGKDEACGAFPGSILESHLKNNNQIKKEELEPMENEANLNIPDFNLFEDINLQLSGQKPVPNLMPLAQMGGKSSSGSKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKTYEDLADHLKAHEAILKCEGNNFTCKTCGRYHNARSKLLLHMSIHINLNGNAWCRGCQQSFESEEKLAEHATSCTMQQAEFEEQSNDMEGSSKRENENDGKSSVAGDENSLTGEVEEVEFESEAEGDGSDQDGSNSENSDDSDSMSDASSSDDDDDDDDEDENRNENGAENDEEAESRSNSRASENSNNSNNSNNSNNSDNSNSSNSSNSEDEDSSDLEEGEGSDDDDDEDEEEDDDSVTKDPEEQEVSQERTLDREEYKTELEVEDDFEAEEVKMEVNRVKYDETSLNVRGGKYSGDHRGQFEASSRSHVKPQAMDYSDEDEDDDGPPILSPMMPLNSREAADRDGDARQGLSPMVSMAVKMEREVEVGELDEIRHEIARGRSASSTSSPQFYQDSMSEKGSKASASVLAGILESGSEEGEDEVDSRLGEDEDAEEGQEEPEEEVEDAGGKVDYTGRFGNEGDSAEGQVSRMEDSGDETFGERSDAEEIDAVEVEVEAEAGMQIHDLNGTVLMVANDSDGNQILIQQNVGDLAGEADQMVTQFVYQDGQNYGLGYRMAATHAQGAPMHSVEIREITDENEDVFGDEEVAGAQMDGDLEEDDEDEESKLGPGNEQGLELEAQSMEEWTDGDLSASAKDEVSRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -