Oabi000663.1
Basic Information
- Insect
- Orussus abietinus
- Gene Symbol
- -
- Assembly
- GCA_000612105.2
- Location
- NW:302156-308266[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.016 0.87 9.3 1.9 1 23 347 369 347 369 0.98 2 19 0.054 2.9 7.7 0.6 2 23 404 425 403 425 0.93 3 19 0.00059 0.032 13.8 4.5 1 23 500 522 500 522 0.97 4 19 0.019 1 9.1 0.5 2 23 526 547 525 547 0.96 5 19 3.9e-05 0.0021 17.5 1.9 2 23 613 634 612 634 0.97 6 19 0.1 5.5 6.8 5.1 3 23 641 661 639 661 0.94 7 19 0.00033 0.018 14.6 0.7 1 21 667 687 667 691 0.92 8 19 0.00038 0.02 14.4 3.5 2 23 767 788 766 788 0.95 9 19 0.00015 0.0082 15.7 5.0 1 23 853 875 853 875 0.97 10 19 0.00022 0.012 15.2 0.7 1 20 880 899 880 901 0.94 11 19 0.037 1.9 8.2 0.3 2 23 912 933 912 933 0.97 12 19 1e-05 0.00053 19.4 0.7 2 23 972 993 971 993 0.97 13 19 2e-05 0.0011 18.4 1.6 1 23 998 1020 998 1020 0.95 14 19 8.2e-05 0.0044 16.5 2.8 1 23 1026 1048 1026 1048 0.98 15 19 3.6e-06 0.00019 20.8 0.4 1 23 1064 1086 1064 1086 0.95 16 19 2.9e-07 1.6e-05 24.2 0.6 1 23 1092 1114 1092 1114 0.99 17 19 3.2e-05 0.0017 17.8 0.2 1 23 1120 1142 1120 1142 0.97 18 19 0.00012 0.0062 16.0 4.1 1 23 1148 1170 1148 1170 0.96 19 19 0.0083 0.44 10.2 0.4 1 20 1176 1195 1176 1197 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGAGGAGATAAATACGTCCGAGGAGCCTCGGAACGAGGAGGCGATCGTCTCCGCGGTGGAGATATGTCGAGTCTGTCTGATGGGTAATCTGGTGATGAGGAGCCTTTTCCACGAAACCGAGGTAGTACCCCTGTCCGCGAAAGCGATGAGCTTCGCCAGCGTTAAGATGCTACCAGGGGATGGATTACCGGCACAAGTATGTTGCACGTGTGCTGAGAAATTGGAATCGGCATATGAGTTCAAACTCCAAGTGGAACAGGCCGATAGTGTTCTACGAGAGAGATTTGATAATGTTAACATTAAGGAGGAACTTTTCTTCAATGAAGTCGAGGTTCATCTGGAGGCGGATCGAACAGATGAAGGAGAGGAAATGCATGTGGAAATTTCTTATCAGGATGATTCAGATACGATATGTCATAGCTCACATAATTCTCAGTCGACGCTTTTGAAAGATCATTTGGCTCTTTTACAAGTTGAGAAGCTTGCAGAGCAAGAAAGAGTTTTACATCATGAAGAGAATCTAATGCAAAGTAACGGAGAGCACATCGAAGAGAGATTAGAAGATCCTGAACAAGGGTTTTCCTCTGAAGAAGTGCAAGAAGGTCAGTCTATTACCATTTCAAGGAGCCAGGAAAATATCAAAGCAGAGAGTTTTCATGACATGGAAGCAATTACTATTGATGAGCACAATTATGTTGTACAGCAAGGCTACACGATTTCGAACGATAAGGAATTTAGTTCTCAACCAACTGATTCCAGTAATCAAGAGATCTCTCAATTTGAGAGTAGACTCGAGGTGGAAGAAAGTGTAACCAGAAGTGACAATGATCTTGAAGAAACGCCCTCAAATCTAGAAACACAAATACCAGTTGAACAAGATGCATCTCAAGTTGAGACACGACGAAGCAAGCGCAAATTGACACGGAGAGCAACCATAAATCGCGATTCAGATGAAGAAAactatttcgaaaatttaaacCTTAGCTCTCGATTGAAAAAAGCTCAAGCAGACAAAGGTGAAAAAGTATTTTTCGTGTGTTACCTCTGCGACAAACAGTTCCTTTCAAAAGGTGTTCTGAAGGAACACATGCATTCGCATGAAGAGGTTAGAAGGGCACTATCTCTGAAGAAAGTACCAGAGAAACCTCAGAAAGTAGCACCTGTTTCAACTAAAATGCCTCCATCAGGAAAACGAGCAAACAAGTGTCCTTATTGTGGCAAGGAATATCTTTATATCATTTCATTTAGTAAACATTTGAAGCAACACGAAAAGGAGAAGGATAGGACAAAGGAAGAACCAATGCCGCTTGAGGTATCTTTCCAGGAAGACAACAATACAATTGATTATCCTGGCTACAATAATAAACAACATTCTGATGTAGAGTGCCCAAGAGTGGAAAGAAGCGAAGAGGCCGATACCAAAGGAAGCAATGACGATGatcaagaaaatgaaaaaagaaaacgaaggaAGAGCAGAAACGCCGAACAATACTCTTGCACCGAATGCTCTGAGAAATTCAAAACAAAACGTGGCTTGTGTAAACATACGATACAACATACCCCTCTTAAATGTACAGTTTGTGAAGAAGAATTCGATGCCTTGGAGAAATTGCGAAATCATCGGACTAAACATGTCATGGAAGGTGTTTTATTGGAGCAAGATTTAGAAGATATAAAGAATGTAGTCGGCAAGGAAGCAGAAGAAGAGGAATTAGAACAAGAGGAAGAAGCAGGTGTGGATGACGGAGAAGGAGATGAACCCTACATGGAGAGTAGTCAGGAAGATTATGTGCATGCTAATGATGGATCTAGTGAAGAAAAGGATCTTAAGTGTCCCAATTGTCCGATGATGTACTCTCACAAAAAATCTTTATCAAGGCATCTGGAAACGCACGTAGGGACCAAATATGGTTGCAAGCTCTGCTGCCAACAATTCTCACGGAAGGACCATTTACGAAGACATGCCGAGCAGCATGGAAGACTTAAATCATACAAGTGCACGCAATGCAATAAAACGTTTGGAAACGAATTGACGCTACGAAATCATTTGATTGCAACAAATCACAGGACAATTATACATGGACAGGAATATGATCCAAATAAGCGGATTAAACGAGTTGCTGCAAAAGCTGCTCAAAAGATCATCGACAAGATTAAAACGGAGGATGGCCTTGAAGATGAAGACGAAGATGACAACCACGATGATTATGAAGGTGATTACCAAGATTTTGACAGACAGAGGTACATGGGTAGAGGAGCACTAAAGAAACAGATAAATAGGAAAGAATTAGAGTGTGCAACATGCAACAAAAAGTGCAGTTCAAAACAGTCATTAACGAAACATATGGAACAACACGTCAAGGAAGAAGCTACAGAGAAAGTAGAAAAACTAGAGAAAGcaaagaaattattggaaaGGAAAGATGTACAAAGGGGTAATTTAGGTATGGGTATGGATGTTGGTATCGGTGCTGACACAGGAGATGttgatgacgatgacgatgaccaTTCCGATTTCGAAAGTGGTCTCGATTGGCCAATGGACAACCATGAGTGTACAACTTGTAAAAAAAGATACAGCACCAAGAAATCTTTGCTTCGACATCAACTACTGCATGAAGAACCAAACTTTGAATGTGACATCTGTAATGTAAAATTCTACCGTAAGGATAAATTAAAAGCCCATTATGATAAGTGCTCCGAAAAGAATCCAGATCAGGTAAGGAAGTGCAACATCTGCGGTGACAGTTTTGAGAATAACGAGATTCTTCGAGAGCATAGAGCAAAACACGTAACAGAGGGTATACTAACGGAAGAAGATTTGAGAGAAATCGAGCCAAGGCCCGAAGAGAGGAAGCAGGGAGAAAAAGTTGCTAGAAAACGGAGAACGGATATTGTTGGCTTAGAATGCACCGAGTGCAATAAAAGGTACACCTCAAGAAAAGGTTTGCTGCGTCACATACAAGTTCACGAAGGTAAAAAGTACCTTTGTGATATTTGCCCGAAAAAGTTCTACAGGAGAGAACACCTCAAGATTCATGTAGCCAAGCATAACATGATAAAGCCATATAAGTGCAATCGTTGTACCAAGCGATTTATTAAGGAAGAACAGCTAACGAATCATCTGTCTAAGCATGACAgaacttttaagaaaaataaggaaacgGACAGTTCGAAGCGTTTCTTATGTGAAATTTGTTCCAAGAGCTTCACCCAATCGACTACCCTTATTGCTCATCTGAGAGCGCACAAGGGAATCAAGCCCTACGTTTGCGAGGTATGTTCAAGGCCGTTCACGACTAATGCTTACTTGAAAATGCATATGAGAACGCATACGCAGGAGCGACCGTACATATGCCAATACTGCTCGAGAGCCTTTGCTCGAGCCGATACCCTGGCCAATCACCTAACCTCTCATACTGGCGAGGCGAAATATCATTGTAAGTATTGTCCAAAGAACTTCCGACGTTTGAAATCCTTGAAAGAACACGTATTTATACATACTGGTCAGAGACCTTACGCATGTCCAACCTGTGATCGTCGATTTAACAACAACGGCAGTCGTTACGCCCACAGCAAGCGGTGCAAGCAAAACTTACTGCAAAATCAGACCAGAGCACAAAATATGAATCCTCCTCAAACACAGATACAAGGTCGTATCCACCAGACAATTACACAAGCACAGGTGATTAAATCGCAGAATATAAAGACCATCACAATAACACGACCAACCGACCAATTAACGCAACAAGGCATCATGCAGCATCAAGAAATATTGATGCCTCTTATTCTACCACTGACGGTAACTCTGACAGATGTCGGAGAAGAAGTTATTCTGCCTGAAGGTACCAAAATATTTACCACCTCTTAA
- Protein Sequence
- MDAEEINTSEEPRNEEAIVSAVEICRVCLMGNLVMRSLFHETEVVPLSAKAMSFASVKMLPGDGLPAQVCCTCAEKLESAYEFKLQVEQADSVLRERFDNVNIKEELFFNEVEVHLEADRTDEGEEMHVEISYQDDSDTICHSSHNSQSTLLKDHLALLQVEKLAEQERVLHHEENLMQSNGEHIEERLEDPEQGFSSEEVQEGQSITISRSQENIKAESFHDMEAITIDEHNYVVQQGYTISNDKEFSSQPTDSSNQEISQFESRLEVEESVTRSDNDLEETPSNLETQIPVEQDASQVETRRSKRKLTRRATINRDSDEENYFENLNLSSRLKKAQADKGEKVFFVCYLCDKQFLSKGVLKEHMHSHEEVRRALSLKKVPEKPQKVAPVSTKMPPSGKRANKCPYCGKEYLYIISFSKHLKQHEKEKDRTKEEPMPLEVSFQEDNNTIDYPGYNNKQHSDVECPRVERSEEADTKGSNDDDQENEKRKRRKSRNAEQYSCTECSEKFKTKRGLCKHTIQHTPLKCTVCEEEFDALEKLRNHRTKHVMEGVLLEQDLEDIKNVVGKEAEEEELEQEEEAGVDDGEGDEPYMESSQEDYVHANDGSSEEKDLKCPNCPMMYSHKKSLSRHLETHVGTKYGCKLCCQQFSRKDHLRRHAEQHGRLKSYKCTQCNKTFGNELTLRNHLIATNHRTIIHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDEDEDDNHDDYEGDYQDFDRQRYMGRGALKKQINRKELECATCNKKCSSKQSLTKHMEQHVKEEATEKVEKLEKAKKLLERKDVQRGNLGMGMDVGIGADTGDVDDDDDDHSDFESGLDWPMDNHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLREIEPRPEERKQGEKVARKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCNRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHKGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQTRAQNMNPPQTQIQGRIHQTITQAQVIKSQNIKTITITRPTDQLTQQGIMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -