Oabi006883.1
Basic Information
- Insect
- Orussus abietinus
- Gene Symbol
- -
- Assembly
- GCA_000612105.2
- Location
- NW:132063-135775[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.3 71 3.3 0.1 2 23 294 315 294 315 0.94 2 15 0.0022 0.12 12.0 0.1 2 23 358 380 358 380 0.94 3 15 2.4e-05 0.0013 18.2 0.5 1 23 386 408 386 408 0.98 4 15 2.4e-06 0.00013 21.3 3.4 1 23 414 436 414 436 0.96 5 15 6.5e-05 0.0035 16.8 2.8 1 23 445 467 445 467 0.97 6 15 7.3e-06 0.00039 19.8 0.6 1 23 473 495 473 495 0.98 7 15 5.5e-07 2.9e-05 23.4 0.2 1 23 500 522 500 522 0.98 8 15 0.002 0.1 12.2 2.6 1 23 529 551 529 551 0.97 9 15 0.00019 0.01 15.3 0.1 2 23 571 592 570 592 0.97 10 15 0.00011 0.0058 16.1 0.2 2 23 600 622 599 622 0.96 11 15 0.0013 0.067 12.8 0.5 1 23 628 650 628 650 0.96 12 15 0.00022 0.012 15.2 3.4 1 23 656 678 656 678 0.98 13 15 1.1e-06 5.9e-05 22.4 1.2 1 23 684 706 684 706 0.96 14 15 0.00011 0.0058 16.1 2.1 1 23 712 735 712 735 0.96 15 15 3.6e-05 0.0019 17.7 0.7 2 23 740 761 739 761 0.97
Sequence Information
- Coding Sequence
- ATGATGTgtgaaaaaaatcaaacagATCCAAATACTGAATCGGAGTTCCATTCCATTTCAATTAAACTATCAAATCTATGTCGTTTATGTGGAAATGTAGCTGTGAATggaattgaaatatttagtgCCAAGGGTATTGAATTTAAACTGCAGGACAAAATATCAATGCATATGCCAATTACCGTTGACTCTAAAGATATAATGCCCTTAAGAATCTgcttaaattgtcgtacaaaaTTAGAGATGACACACTCATTGGTCACTGCTTGTGTACGAACCGACATTAATATTCGAAAACTCTTGAATATTCATGAAACGgtggaatatgcaaACAAATTTCAGTCACTTATAGAACATTGCTCTATGCAAGTAGATTCTAACAAATGTGGGAATGACATGGTCGATAATGAATCTGTGccattaatttctaaaaatgatgAAGTCTGTAATATAAAAGAATATAACAAGCCGGAATCTTTAATGATCTCTGAATTAGAACATGTAGCAGTTTTATCCCAACATTCTGAATTATCCAACAATATCGATATGAGTAATATGGAagacttaataattaatgatgaAACAAATGATGATACAAATGCAAATTCTCTTAATGAGTTTGAAACTTTTactgagataaaaaatacaaagaaTAATCCAACACTGGCCTTTTCAACAAATAATGATGTTCGTATAGATAAAACTAATccaattacatattttattaataaaaaggaaggaatgtttaaaaatcattCTGATTTGTGTGGAAATAAGAATAACTTGGCTCataaaagtaatgaaatattatgtGCGCAAGTTGATTGTACAgacatttccgaaatttcagaCACAATAAGTTTTAACTTAAATCAAAGAACATGCGATGTCTGTAAAGATACATTTGATAATGAAGAGATCTTTCAAGAACATATAATTGTACACAATAAACTTCCTCATGAATTAAACTCGGATCTAGATATTGATGAGACTTTAGTGGGGAATCAAACCAGCAATAATATGAATGATCAAGCCAAATTAAAGACAAGTGATCTGAATGTCCCAAATAGAAGATGTGGTTACTGCCAAGCAATATTTTCAGTGCCAAAAGAATTGCAAATACATATATCCGAATATCATGGAGAACAAGTACCATTCAAATGTAGCTTGTGCGATAAGACTTATCAAAAGTGGTCGAATTTGGATGTTCATGAAGCAACTCATAGGCTGGATAAACCTTATCTTTGTGATCTTTGTGGTAAAAGCTTTAAGCATTCTAATAATTTAAGAGGTCACAAGAGAACTCATTTAGATGTATCAAAAAAGAAACGACATGTTTGTGATATATGTGGAAATGCCTACCGATCTAGATTTCATCTGCGGGAGCACATGAACCAACATGATGGAAACAAGCCTTACCCATGCGAGGAATGCGGGAAGGCCTTCTATAAGAGGATACAGTTACGGCAACATAAGCTGTCCCACGGGCTAAACAAGTACGCCTGTCCAGTTTGTGGAATGACCTTTAATCGTAGAGGAAATATGAATGCTCATCTCAAGAGACACAACAATAGAGAAGGCACTTATGCTTGTAGTGTTTGCGAATATCGATGCAGCTCGATGAGCGAATTAAAGTTGCATAGGAAACAACATTCCGAAACAGACATCATAGAGAGTATTAAGAAGAAATCTAGTAACAAAACAGTGTGGCAGTGTGAAGTGTGTGCACGAGTGTTTTCAAAGCGTGCTGCTCTATTGAACCATGAACGGATACACACAGGGGACAAAGTAAGGATAGAATGTGACATTTGTGGCAAGAAGTTAGCGAGCAAAAGTTCTCTGGCATAccataaaaaatcaattcacTCAAATGAAAGACCTCACATGTGTCAATATTGTGGGGAATCTTACGTGTCTAAAGAGGCACGTCTAATACACGAAAGAGTCCATACTGGAGAACGTCCATATGTCtgtaaaatatgtaatatGCGATATAGATGCTCGAGCAATTTGAGTCAACATATGAAAATCCATTCAGAAGTTCGACCTCATGCATGCAGTTACTGCAATAAAAGTTTCGCTCGTAAAAGTGCACTAAGTGTTCATGAGCGAATTCACACAGGTATTAAGCCATTTGCTTGCTTGACGTGTAATAAAACTTTCGCACAAAAAAACGACATGCTTAAGCATACGAAAACTCGCCACTCGAAATCGATACAATGCGAGCAATGCGACGAAAAGTTTTCCACAAAAAGGGACATTTTAAAGCACATGGCAAAACACGATCACGAATCCTTCCCAGAATCGTCAAAAGGTCCTACCATGAATGAATTTGAGGACATGTCACAGCAGTTGGAAACATACACCTTAAGTCTACCCTGCATACCTATTGAATCTTCAACGGAACCAGAAATTGTTCATAATACTGAATAA
- Protein Sequence
- MMCEKNQTDPNTESEFHSISIKLSNLCRLCGNVAVNGIEIFSAKGIEFKLQDKISMHMPITVDSKDIMPLRICLNCRTKLEMTHSLVTACVRTDINIRKLLNIHETVEYANKFQSLIEHCSMQVDSNKCGNDMVDNESVPLISKNDEVCNIKEYNKPESLMISELEHVAVLSQHSELSNNIDMSNMEDLIINDETNDDTNANSLNEFETFTEIKNTKNNPTLAFSTNNDVRIDKTNPITYFINKKEGMFKNHSDLCGNKNNLAHKSNEILCAQVDCTDISEISDTISFNLNQRTCDVCKDTFDNEEIFQEHIIVHNKLPHELNSDLDIDETLVGNQTSNNMNDQAKLKTSDLNVPNRRCGYCQAIFSVPKELQIHISEYHGEQVPFKCSLCDKTYQKWSNLDVHEATHRLDKPYLCDLCGKSFKHSNNLRGHKRTHLDVSKKKRHVCDICGNAYRSRFHLREHMNQHDGNKPYPCEECGKAFYKRIQLRQHKLSHGLNKYACPVCGMTFNRRGNMNAHLKRHNNREGTYACSVCEYRCSSMSELKLHRKQHSETDIIESIKKKSSNKTVWQCEVCARVFSKRAALLNHERIHTGDKVRIECDICGKKLASKSSLAYHKKSIHSNERPHMCQYCGESYVSKEARLIHERVHTGERPYVCKICNMRYRCSSNLSQHMKIHSEVRPHACSYCNKSFARKSALSVHERIHTGIKPFACLTCNKTFAQKNDMLKHTKTRHSKSIQCEQCDEKFSTKRDILKHMAKHDHESFPESSKGPTMNEFEDMSQQLETYTLSLPCIPIESSTEPEIVHNTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -