Oabi009060.1
Basic Information
- Insect
- Orussus abietinus
- Gene Symbol
- -
- Assembly
- GCA_000612105.2
- Location
- NW:2906760-2910538[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00041 0.022 14.3 2.0 2 23 376 397 375 397 0.96 2 15 0.00039 0.021 14.4 0.6 3 23 405 426 403 426 0.93 3 15 2.2e-05 0.0012 18.3 0.6 2 23 523 544 522 544 0.97 4 15 9.1e-06 0.00049 19.5 2.1 1 23 550 572 550 572 0.98 5 15 0.00015 0.0079 15.7 0.4 1 23 578 600 578 600 0.95 6 15 2.9e-06 0.00015 21.1 1.3 1 23 616 638 616 638 0.98 7 15 5.4e-06 0.00029 20.3 1.2 3 23 646 666 644 666 0.98 8 15 1e-05 0.00055 19.4 1.2 1 23 672 694 672 694 0.98 9 15 0.00066 0.035 13.7 0.2 1 23 700 722 700 722 0.99 10 15 3.7e-06 0.0002 20.7 0.2 1 23 728 751 728 751 0.94 11 15 1.5e-05 0.00079 18.9 1.3 1 23 757 779 757 779 0.98 12 15 9.5e-05 0.0051 16.3 4.7 1 23 785 807 785 807 0.98 13 15 4.9e-06 0.00026 20.4 0.2 1 23 813 836 813 836 0.96 14 15 5.5e-05 0.0029 17.1 0.6 1 23 842 864 842 864 0.95 15 15 4.3e-06 0.00023 20.6 4.7 1 23 870 892 870 892 0.98
Sequence Information
- Coding Sequence
- ATGGATTCAGCAATtagtgtaaaaaatgaatggatGCCAGTAAAACTCAATGTAACGAATGGACTACATCCTTTGGTGAATGAGAAACTGGATTCTCGTTATTCATCAATTAAAGATGTAAATTTTGTCATTGATGGTATACGTTCTGAATGTATAGAACCAAAGTTAAATTCGGAAATGTTTAACTCTAAACGAaataaaaatgtacatcaaGTACAACAGAAGCCTAATGACTTATCCTGTCGAGAAAGACAAGGTAGCAATAATTCATATAGTTTACAaccaagaaaaataaatcatcgGGGACAATTGGATGTAATTGACATGCATGAAGAGAAATCAGTAAGTTATAAATATCTCATGGTGTACGAGGAACAATTCTCCAAATTTATTGTACTTAAGGCACTACGAAGTTGTACCGTGAAGGAAGTAGCATATAAATTGCTAGATGCACTAGCGATAATTGGAGCACCTAAAGTTTTACAAAGTGGAAATGGTTGCGACTTTGCTGAAGCAGTTGTACATGAATTACAAGTATTATGGCaagatattgaaataattcatgaaaatgttttaatatgcGGTGACCACAGGGATTTTAAAAAGCTAGTGGCTTCTTGGCTGGCTAAGAATCCATCAAAACTATGGTTCGAAGGTCTCAAAGCCGttcaaataattgaaaatgcaACTTTTTATTGTAGAAATGGTAAGACACCTTCTAATTTGCTATTTGGACACAATATATACGAAGAATTTAAGATTTCTCTCCCTAAGAATTCGTCGAGAAGTATTTTAAAAGAGGAAGATTTAGCAAATGCTGTCGACAATACAGACACCAATATTAATAAAGTATTTGTTAACTGTCATGCTATGGAAGTTGTAGATGTTAAAATTGACAAGGATGTCGAAAGTcgTTATCATGTAGAAGGAAATGATTCATACGACATGCAATATGGGGCTGATACAGATAGACTGGTTGTACGTAATGACAGTATTAACGTTTTTGATTTTGTCAATGTCAGAACCGAAGTATTAAGTGGAGGGCAATTGGATGATTCACTGTCAGAGGAAGAAACAGACTTAGCTGCTCGGAAATTAAAGATTATCATTGATAAGTATCATCttaaatgcaaaatttgtGAAAAACAATACATGAAATTGGGCCActtaaaaaatcatataaaagcCCACTTGAGTGCGGGTCGAATTGACTGTAGATTCTGCCAGAAAACATTTCGTGCCTCAGATCAGTTTGAGAAACACATGGAAGAAGTACacaatgagaaaaatatttttgaaactaCCAGTTTCGAGTCTACCATAAAGACAGAGAAGAAGGTGCATGAGGAATTAGAGGAAAGCAGTTTGCAAACTAGATTAAAAAAGACAGAGCTACAATCTACCAAAACCTCCAAAAGAAATCGAACCTCTATATCACGACTTTCCCAGAAAGATGGAATAACATCCATGAacaaaaccagtaaattaatgaaacgcgCTAGCCTACTAGTTAAACGAAAATTCAGAGAGTCTCGCACTACAAAGTCTAATGGCGCACCTTTATTAGAATGTACATATTGCGAACAAAAATTCGAGTTCCCAAGTGTTTTAAAGAGACACATCAGATCACACACAAACGAGAGACCCTACGTGTGTCAAATTTGTCAAAAGAGTTTTAAACAGTTAGGTCATCTAAGTCAGCATTCAATAACACATGTTGATTATAGATCCTTTCTGTGTGGGGTGTGCGGAGTGAAGTTCGAATCACTGGACACCCTGAAGACTCACACTCAAACACACCAGGGAGAATCAGAATCGTACAGGCCAAAAGAAGTCTTTCGTCTTTTTGAGTGCGATAGCTGTAAGAAGGTTTTCACAACGAAGAGCGTATTGGAACGTCACATATTCACTCACACTCATGAACGGCAGTTTGGTTGCAAAGTTTGTGGCAAACGTTTCAAGCAAGCTGGCCATGTGAAATCTCACATGTTGGTACACACCGGTGAAAGAAGATTCGAGTGCACAGTTTGTTCGAAGCGCTTCAGTTTAGCAAATTCACTGAAGAAACACATGTATATCCATAACGGTGAAAAGCCTTATCAATGTGACGTGTGCGGAGCCAGGTTTTTAGAGAAGCGTAATCTCAATGGGCATCTTATGACTCATACAAATGAACGTCCTTATTCTTGTAAGATTTGTGGTAAACGGTATACACTAGCCGATACTTTACGGCGACACATTAGTGCAGCTCACGAGGATGGTCGGACCTATCAGTGCGAGATCTGTGCCAAGATGTTTAAACAACTCGCTCATCTGTCAGTGCATAAAAAAGTGCATAATGACGAACGACCTTTTCAGTGTCATCTTTGTGACAAGAACTTCAAACACAAAAACGTGTTGAAGTCCCATCTGGCTATCCATGCTAATGTCCGTCCTTTTGAGTGCGATGTGTGCAAGGCAACGTTTGTAAGAAAAACGAATCTCCAAACTCACATTGCTTCGGCACACATGAACGAACGACCCTATGCCTGCACAATCTGCGAGAAACGTTTTAAACAGATAAGTCACTTAAATGGCCACGTGGTCGTGCACAGTAATTCTATGCCATTCCAATGCGACTTCTGCGATCGCCGATGTAACCGACTGGACAATCTCAAGAAACATATGAGATTACACACAAAAAATAAGGAATGA
- Protein Sequence
- MDSAISVKNEWMPVKLNVTNGLHPLVNEKLDSRYSSIKDVNFVIDGIRSECIEPKLNSEMFNSKRNKNVHQVQQKPNDLSCRERQGSNNSYSLQPRKINHRGQLDVIDMHEEKSVSYKYLMVYEEQFSKFIVLKALRSCTVKEVAYKLLDALAIIGAPKVLQSGNGCDFAEAVVHELQVLWQDIEIIHENVLICGDHRDFKKLVASWLAKNPSKLWFEGLKAVQIIENATFYCRNGKTPSNLLFGHNIYEEFKISLPKNSSRSILKEEDLANAVDNTDTNINKVFVNCHAMEVVDVKIDKDVESRYHVEGNDSYDMQYGADTDRLVVRNDSINVFDFVNVRTEVLSGGQLDDSLSEEETDLAARKLKIIIDKYHLKCKICEKQYMKLGHLKNHIKAHLSAGRIDCRFCQKTFRASDQFEKHMEEVHNEKNIFETTSFESTIKTEKKVHEELEESSLQTRLKKTELQSTKTSKRNRTSISRLSQKDGITSMNKTSKLMKRASLLVKRKFRESRTTKSNGAPLLECTYCEQKFEFPSVLKRHIRSHTNERPYVCQICQKSFKQLGHLSQHSITHVDYRSFLCGVCGVKFESLDTLKTHTQTHQGESESYRPKEVFRLFECDSCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLVHTGERRFECTVCSKRFSLANSLKKHMYIHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPYSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCDKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYACTICEKRFKQISHLNGHVVVHSNSMPFQCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -