Oabi008248.1
Basic Information
- Insect
- Orussus abietinus
- Gene Symbol
- -
- Assembly
- GCA_000612105.2
- Location
- NW:1279255-1282645[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0087 0.46 10.2 0.6 2 23 150 171 149 171 0.97 2 15 3.6e-05 0.0019 17.7 1.2 2 23 176 197 175 197 0.98 3 15 6.1e-06 0.00033 20.1 2.1 2 23 204 225 203 225 0.97 4 15 4.9e-07 2.6e-05 23.5 0.5 1 23 261 283 261 283 0.98 5 15 0.00027 0.014 14.9 0.4 1 20 289 308 289 311 0.94 6 15 1.9e-06 0.0001 21.6 1.0 1 23 317 339 317 339 0.98 7 15 1.3e-06 6.9e-05 22.2 1.2 1 23 345 367 345 367 0.96 8 15 2.5e-05 0.0013 18.1 0.6 1 23 373 395 373 395 0.98 9 15 2.3e-05 0.0013 18.2 6.8 1 23 401 423 401 423 0.97 10 15 6.5e-08 3.5e-06 26.3 1.0 1 23 428 450 428 450 0.97 11 15 8.4e-05 0.0045 16.5 0.2 1 23 456 478 456 478 0.97 12 15 6.6e-07 3.5e-05 23.1 3.9 1 23 484 506 484 506 0.96 13 15 5.8e-05 0.0031 17.0 0.6 1 23 512 534 512 534 0.98 14 15 1.8e-05 0.00098 18.6 0.5 1 23 540 562 540 562 0.98 15 15 0.00011 0.0061 16.1 0.8 2 23 569 591 568 591 0.94
Sequence Information
- Coding Sequence
- ATGGACGATCCTAACGCGAAAGATGAGCCGATGGATGCCCTAACTATACATACTCATGCGATGCGTTATTTCAAGGATGAAAATATTGTAAGCGTTGTTCTTAAGGAAGAACCAGGTGAAAGATTCGAGCCCGACTACATGGAGGATATCTGTTCTGGAACCTTTGAGAAGGTGTTCTTGCCGATTGAAAATCATGATGTCGATTTTCCAGATGAAATGgTAAAACTGGAAATTGACGGAGAAGCAAGCACTCATCAGAATTGGGCTGCAGAGATAGCAGCTGCGAATTTGTGCGATAAGGACAACGAGGCAATGCAGAGGTGTTTAATGAATCCAGAATTTGGACAGATTAGGCAAGAAGAAGAGACCACAAAGCATAGCACCTTTGCCAGTGTTGGAGGTAGCAGTGGTGGGAGCAGTACGCAACAGCCCAAATTCTATAAAATACAATGTTCGATCTGTAAAAAGTGGTTTTTGAACAATGACTCGATGATTACCCATCTGAGAACGCATTGCAGCGGTAACCAATGCGGGGTATGCGAGCAGAACTTTCAGGATAAATCAAGCCTCCATGCCCACATGCTGACACATGTCGGTATGAGCCCATTGGAATGCAATATTTGTCAGAAGAGATTTGCCTACAAATGGTGCCTGCGAAACCATATGCAGGTACATGGAGTAGACAAGACACAGTACGACTCGTGCGAGCCACCCCCTCAGGAGGGATTCCCGAAGATTCCAAGTCTGGAGCCTCAGGCAATTCGCACAGAGGACCGGCCCTACGAGTGCGACGTTTGTCGGACTACCTTTCGAGAGAAAGGCAACCTCAACCGGCACATGCTGATCCATACCGGGGAGCGTCCATTCAAGTGTAATGTATGCTTTGCAGCTTTTCGAGAAAAGTCAAAGCTGAATGTTCACATGCCAATCCATACCGGGGCCAAGCAATATAAATGTACGATGTGCTATAGATCATTTGCTCAGAAGACAGCACTAAATAACCACATGCTGGCACATAGTGGAGAGAAACCGCATGCTTGTGGTATCTGCGAAAAGACGTACAAGCGGAAAAGCGAGCTGATACGACATACCATGGTGCACACTGGAGAACGGCCCTACGAGTGTAAAGAGTGTCTCATGACGTTCCGAGAGAAGGCCAAGCTCAACTCGCACATGTTGGTGCACACTGGTGAAAAGCCACACGAGTGTCACATATGCCACAAAGCTTGCGCCCGTAAGTCTGATTTGAATAGCCACATGCTTTTGCACACCGGTGGTCAGTATGATTGCAAGGTGTGCGACAAGATTTTTACCAGGAAGTCCGACCTGAATCGGCATACGCTGATACACACCGGGGAGAAGCCGTATGCTTGTGACCTCTGCGATATGGCCTTCCGGGAGAAGACCCGTCTAAATTCGCACATGTTGGTGCACACTGGTGACAAGAGGCATGCCTGTCACATCTGCCAGAAAACCTTTCGTGAGAAGTCAGCCCTTAAGAAGCACATGTTAGTGCACGCCGGTGACAGGCCGTACGAATGTTTTGTTTGTCAAAAGGCATTCACCCTCAAGACTACCCTGAACAGTCACGTGCTGATCCATTCGGAGGACAGACCCTATGAATGTGGCACTTGTCAAAAGATATTCAGGGATAGGCTGGCATTGCGCAAACATCTTTCGGTGCATGCAGCGGAAAAGGCCCTCGAGTGCCCTGTCTGTTTGAAGAAGTTTGTCCATAAAACTGCGCTTCAGAATCACGTGTCATCTAATCATTCATCCTGA
- Protein Sequence
- MDDPNAKDEPMDALTIHTHAMRYFKDENIVSVVLKEEPGERFEPDYMEDICSGTFEKVFLPIENHDVDFPDEMVKLEIDGEASTHQNWAAEIAAANLCDKDNEAMQRCLMNPEFGQIRQEEETTKHSTFASVGGSSGGSSTQQPKFYKIQCSICKKWFLNNDSMITHLRTHCSGNQCGVCEQNFQDKSSLHAHMLTHVGMSPLECNICQKRFAYKWCLRNHMQVHGVDKTQYDSCEPPPQEGFPKIPSLEPQAIRTEDRPYECDVCRTTFREKGNLNRHMLIHTGERPFKCNVCFAAFREKSKLNVHMPIHTGAKQYKCTMCYRSFAQKTALNNHMLAHSGEKPHACGICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPYACDLCDMAFREKTRLNSHMLVHTGDKRHACHICQKTFREKSALKKHMLVHAGDRPYECFVCQKAFTLKTTLNSHVLIHSEDRPYECGTCQKIFRDRLALRKHLSVHAAEKALECPVCLKKFVHKTALQNHVSSNHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -