Oabi009288.1
Basic Information
- Insect
- Orussus abietinus
- Gene Symbol
- lov
- Assembly
- GCA_000612105.2
- Location
- NW:1147391-1164940[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6 4e+03 -3.3 0.0 10 20 170 179 168 180 0.65 2 2 1e-18 1.6e-15 55.6 0.0 1 44 504 547 504 548 0.96
Sequence Information
- Coding Sequence
- ATGTCGAGCGCCGCGGAGAGTCCTGACGGGATGGCTTTGCAGTCCCATTATTCCCTGCGATGGAACAACCACCAGGCTCACATCCTCCAGGCCTTCGAGGCCCTCCTGCACGCGGAGATCCTCGTCGACGTCACCCTGGTCTGCACCGAGACCAGCCTCAGGGCGCACAAAGTGGTCCTCAGCGCGTGCAGTCCATTCTTCGAGCGGATATTCGCGGAGCACCCGTGCAAGCACCCGGTGATCGTGCTGAAGGACTTCCCCGGGCGTGAGGTAGCAGCCCTGATCGACTTCATGTACCGGGGCGAGGTCCGAGTTGGTCGAGAGGAGCTCCCAGGGTTGATGAGAGCAGCCGAGAGCCTGCAGGTGCGAGGCCTGGCGTCGTCGGAGCCGCGACCAGCGAGCCCACCCGAGACCCCGACGACGGACCTTCTCCTGGGGGAGCCGTCGACGCCGGAGGGGGCCAGACAGGGGACCCCGGAAGAGGATGACAACGCGTCCGAGAGCGCCGCGCATGTACGGGAGGGCACCTCCTACCAGCGGGACCATCGGGACCATCGGGACCACCGGGACCACCGGGACCGGCTACCACACATGGGCCACCTGAACTTCTCCCTCCGGGAGCTGAGAGACTCGTGCGGTTCGCCGCTGATGCCGAGGAGGAAGCAAGCGAGGCCACGCAGGAGGTCCGGGGACCTGGTCCCGCAAGACCTGAGCAGGCCCCACCCGCCCACCACCCCCAGTCCGCCGCCCAGCGGGCTGAACCTCAGCAGCCAGTCGCAGCAGGCTAACCCGCAGGGGGCGCAGCAGGCCCAGCCCCAGGTACAGGAGGAGATCGCCGAGAACCTGTCGATGAAGAGGTCGTTGCCGACCGAGGGTGGGGCGGAGCCGGCGATCAAGACCGAGAGCGAGGCCGCCAGCAGCCCCAGGGGGTCGCCGTTGACCGGCAGCAGTCTGCATCCGGACGGGTCCCTCCAGGACTTCCCGGCGGCGGGTCTGCCCGGCATGTCCGCCCTCTCGCTGACCCCTCCGCACCATCACAGCGAGTACCTGACGAGCCTGGGCCAGTTGGCGGCCCAGTGGCTGCCCAGCCACCCGGCTGCCCAGAGCCAGCTGACCCAGGGCCACCATCCCCGAGAGGGCAGCCCCCATGGCCGGGCGCATCCCTATCAGCAGCAGGACCCCGCGGGACCGCTGACCCCCAGACGATCCGTCACCGTCTTCCCCATGGACGGCGTGTCACCTCTCAGCGGCGCCGGTGGCTTGTTTCCTCCTGGGAGTGGGCTAGACCGGGGGTCGCTTCTGGCGGATCTGCACGACAGTTTCAAGCCGGAGGCCCTGCACGGCCTCTTCGGGGGAGCCAATCTGGGTCATCATCCGGTCAAGAAGGCCAAGAAACACCGTGCCGACGGGGATGGACCTCGCAGGTGGTCGGAACATAGCAGGGGGCTCCCGGTCGGCAGGCCCAAGGGCCAACACAGTGCTCCTCGTGGCGGACCCCCCAGGTCCTGGACGAACGCCGAGCTCACCGAGGCTCTGCAACACGTGTGGAACAAGAAGATGACCACCTCCCAGGCTAGCCGGATATTCGGGATCCCGTACAATAGTCTGCTGATGTACGTGCGAGGGAAATACGGGAAGAGCCTCAAGCTGGAGCAACTCAGGAGGGACTGCACGGGCGCCACCACCGGCGAGGTCATGAACTCCCTGAACAACAACGTCAAGGCCGTCCAGCCACCTGCCCAGATGAGTCATCCGCTTGCCGGGCTGCCGCATCCCGCCGATGATGGCAGCTTCTCGCACCATCCCCTGCTCGGAGGGAACCTGCCCCAGGGCTTCTTCCCGGACTTTGGCGCCGCCTTCCCCGTCCCGGTCAGCATGGTCCACCTGCTGCCCCCTAGCGAGCAGAAGGCTTTCGAGCCCCCGCCACCTGGGGGGGCCCCGACCGACCTCGCTCCCAAGAGCAGGACTCCCTCGCCGGCGAATCACGAATCCTTAACCCAGCCGACCTCGGCACCGGCGCTGCTCCAGCAGAACGGGTCCAACTAA
- Protein Sequence
- MSSAAESPDGMALQSHYSLRWNNHQAHILQAFEALLHAEILVDVTLVCTETSLRAHKVVLSACSPFFERIFAEHPCKHPVIVLKDFPGREVAALIDFMYRGEVRVGREELPGLMRAAESLQVRGLASSEPRPASPPETPTTDLLLGEPSTPEGARQGTPEEDDNASESAAHVREGTSYQRDHRDHRDHRDHRDRLPHMGHLNFSLRELRDSCGSPLMPRRKQARPRRRSGDLVPQDLSRPHPPTTPSPPPSGLNLSSQSQQANPQGAQQAQPQVQEEIAENLSMKRSLPTEGGAEPAIKTESEAASSPRGSPLTGSSLHPDGSLQDFPAAGLPGMSALSLTPPHHHSEYLTSLGQLAAQWLPSHPAAQSQLTQGHHPREGSPHGRAHPYQQQDPAGPLTPRRSVTVFPMDGVSPLSGAGGLFPPGSGLDRGSLLADLHDSFKPEALHGLFGGANLGHHPVKKAKKHRADGDGPRRWSEHSRGLPVGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRRDCTGATTGEVMNSLNNNVKAVQPPAQMSHPLAGLPHPADDGSFSHHPLLGGNLPQGFFPDFGAAFPVPVSMVHLLPPSEQKAFEPPPPGGAPTDLAPKSRTPSPANHESLTQPTSAPALLQQNGSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00980290;
- 90% Identity
- iTF_01120325;
- 80% Identity
- iTF_01120325;