Basic Information

Insect: Orthosia incerta
Gene Symbol: -
Assembly: GCA_948252205.1
Location: OX411766.1:2010645-2012833[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.19 26 6.8 1.3 2 23 63 84 62 84 0.94

2 10 0.00011 0.015 17.0 0.5 1 23 90 113 90 113 0.97

3 10 0.0016 0.21 13.3 3.4 1 23 125 147 125 147 0.98

4 10 0.0038 0.52 12.1 5.0 1 23 153 175 153 175 0.98

5 10 0.013 1.8 10.4 1.3 1 23 182 205 182 205 0.96

6 10 0.26 36 6.4 0.7 2 22 214 234 213 234 0.94

7 10 0.037 5.1 9.0 4.6 1 23 332 354 332 355 0.96

8 10 0.075 10 8.1 0.6 1 20 363 382 363 384 0.91

9 10 0.01 1.4 10.8 8.3 1 23 416 439 416 439 0.97

10 10 0.00053 0.072 14.8 4.4 1 23 472 494 472 495 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.19	26	6.8	1.3	2	23	63	84	62	84	0.94
2	10	0.00011	0.015	17.0	0.5	1	23	90	113	90	113	0.97
3	10	0.0016	0.21	13.3	3.4	1	23	125	147	125	147	0.98
4	10	0.0038	0.52	12.1	5.0	1	23	153	175	153	175	0.98
5	10	0.013	1.8	10.4	1.3	1	23	182	205	182	205	0.96
6	10	0.26	36	6.4	0.7	2	22	214	234	213	234	0.94
7	10	0.037	5.1	9.0	4.6	1	23	332	354	332	355	0.96
8	10	0.075	10	8.1	0.6	1	20	363	382	363	384	0.91
9	10	0.01	1.4	10.8	8.3	1	23	416	439	416	439	0.97
10	10	0.00053	0.072	14.8	4.4	1	23	472	494	472	495	0.96

Sequence Information

Coding Sequence: ATGGCAGACTCACAAAATTCGGACCAACATGAGAATGAGATGCTCAGTATGTTCGCCAGTGTCTGGGTGAAGGTGGAAGTTGATGAAGACGATGATGACAACTCAGAAAATTCACATCAAGTTGAAAATGTTTCCAGGAACTACAAGAAAAAGAAGACACCAAAAAACCGCATCAAAAAAACTCTCAAATGTGACACTTGCGAATACACAACCATATACAGGAATTGCTTGAACCTCCATGTCTTAGGACACACCAACGCTAAACCGTTCTCCTGTGATGCTTGCGATTACACCACAAAGTATCCCAACTCCTTGCAAAGACATATGATGATTCAACATGATATGAAATCAGCAGACGATAAACTTGAAAGCTTCAACTGCGATGAATGCCCGTACACTACCCACTTTAAATGGAATCTTAAGGCTCATAAGAGAAAGCATAAATTAGAAAAACAATACAAATGTGGTCATTGTGATTACGCAACGGCTTATAGACATAATTTTATGAAGCATAGTAAGGTACATAATAAGCAGGAGGTCATTTTTAAATGTGATAAGTGTCCGTTTGTCACTAAGTATGAAGGGCATATTTCAAGGCATCTAGCTAAGATCCATAATGAGGTATCAGAGAAAGCCAACAAGTGCGATTTGTGTGACTTTTCAACAAAAGTAAGATGGAGATTGAATGTACATAAACGCAGAAGCAAACAGAATGATATAATCAAATGTTCTAGCTGTGACTTTGAGACGAGTTATATATGCGAGTCAAAAAAACACAGATCTATACATAACAATGATATCTCGGATTATAAACTGAATGAGAATAGTGGTGAAATGACTTTTGATACGCTCGAATATGAGCCAACACCAAACCCTGTTGATGATGCCAATCTAAGCGTTCACGAGAAAAGTAATAACTACATGTTGGATCCTGAAAACGAGGTAGATTGGAAGAGCATAAGAGTCATCGAATCTAATTGCAAAGACCGTCCTTACCAATGCACAATGTGTAAATACACATCTCCGTTCAAGGCTTCCGTACGAAGACATTTCCAAAGGCATCACACTGGCAATGAAAACCGACCGTATAAATGTGTAAACTGTGACTTTTCAACTAAAACTAAGGACCAGATTGCGTTGCACAATAAACGTAGCCAATCTGAATTACAATTGAGATGTACAGAATGTCCATTTATTACATTATTCAAATGTCAGTTTGTAACACATCAGAAATGTCACTATCCACATAAGTGTACTGAATGCAACTATTCCTGCAAGCATAAGTATGAAATCCAAAAACATGTGTCTACCATGCATATGGGCAATGGTTTACAATGCCGCTTCTGTAATTTTAAGGCATCGAGAAAAGAGAGTTTACTCTGCCATGAAACAATACATACGGGGAATAAACCGTTTAAGTGTAAGTACTGTGATTATAAATCTGTAAGAAGGTCGCTTCTGGATAACCATGTCAAAAGGCACCATAGTGACGTATGTCATAATCCGGTGATCGTTGCTGATAGCAAGATTGAGACATTGAAAATACCTATTGGTAACAACGTTAGCAGTTCAGATATTATTCAGAATATTAGAGAGCAGAATATTTCTTTAGAGGACATTTTAGATTCGCCCGTTGTTAAGGATTTTGCTGCTATAATTAATTCTGCTCCTCAGAGTAACAACGGGCCTTATAGTGGTGTCTAA
Protein Sequence: MADSQNSDQHENEMLSMFASVWVKVEVDEDDDDNSENSHQVENVSRNYKKKKTPKNRIKKTLKCDTCEYTTIYRNCLNLHVLGHTNAKPFSCDACDYTTKYPNSLQRHMMIQHDMKSADDKLESFNCDECPYTTHFKWNLKAHKRKHKLEKQYKCGHCDYATAYRHNFMKHSKVHNKQEVIFKCDKCPFVTKYEGHISRHLAKIHNEVSEKANKCDLCDFSTKVRWRLNVHKRRSKQNDIIKCSSCDFETSYICESKKHRSIHNNDISDYKLNENSGEMTFDTLEYEPTPNPVDDANLSVHEKSNNYMLDPENEVDWKSIRVIESNCKDRPYQCTMCKYTSPFKASVRRHFQRHHTGNENRPYKCVNCDFSTKTKDQIALHNKRSQSELQLRCTECPFITLFKCQFVTHQKCHYPHKCTECNYSCKHKYEIQKHVSTMHMGNGLQCRFCNFKASRKESLLCHETIHTGNKPFKCKYCDYKSVRRSLLDNHVKRHHSDVCHNPVIVADSKIETLKIPIGNNVSSSDIIQNIREQNISLEDILDSPVVKDFAAIINSAPQSNNGPYSGV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01231145;
90% Identity: iTF_00112145;
80% Identity: -