Oinc027492.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orthosia incerta
Gene Symbol
-
Assembly
GCA_948252205.1
Location
OX411769.1:9927015-9937001[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.072 9.9 8.1 4.6 1 23 246 269 246 269 0.91
2 10 1.8 2.5e+02 3.7 0.5 2 23 295 319 294 319 0.89
3 10 0.028 3.9 9.4 2.3 1 23 341 363 341 363 0.97
4 10 0.078 11 8.0 2.0 1 23 367 389 367 389 0.88
5 10 0.039 5.4 8.9 1.9 1 23 393 416 393 416 0.94
6 10 0.16 22 7.0 4.2 2 23 423 445 422 445 0.94
7 10 0.003 0.41 12.5 0.5 1 23 452 475 452 475 0.95
8 10 0.00095 0.13 14.0 4.9 1 23 481 503 481 503 0.98
9 10 1.8e-06 0.00025 22.6 2.7 1 23 509 531 509 531 0.98
10 10 0.00014 0.019 16.7 1.3 1 23 537 559 537 560 0.96

Sequence Information

Coding Sequence
ATGGAGTTCGACGAGATAGTGGTGAAGGAGAGCCCCGGGCTATGCCGGTGCTGTCTCTCCGAAGGATGTTACAAGGATTTGGGATCGGAGTATACCTGGATGAATGAAACTGAGGTTTATGCTGATATGCTGCTTGAATGCTTCGATATTAGCATAACCCAGCATAATGAAGGTCCAAATGGTCCAAACCGACTCATCTGTGAGGTCTGCATCACCCGGCTGCGAGACGCTTGCAATTTCAAGAAACAGGTCATGGACTCAGAGAAGAAATTCATTGATATGATTGGCAGGGGTGAATTTAGGCCTAAGATGCTAATCTACCAGACGCAGATGAAATGTGAAGATCCAAATGCTGTGGTGGCCTCTGTAGAAGATGCAGACATTGAATATCTTGATGACGACATTGATTTTGGTGATGATGACCTAAAAGACGAATTATCGCAACCTTCAGTGTCAGAACTACCAGTAGCAGTAGCCACATTGCCTGTCAAGGGGAAACGTGGCCGTCCCCGGAAGAACACACCAGTGAAGCCGGACAAGAGGGCGAAAGTCGCCAAACTCGACGACAAAGCCAAGACGTCGAAAACTGTTGCTAAAGGTGAGAAACGGCGCATCACAGAGGCGTCGAGTAAGTCCTCAATGACGTCGACAAAACGCAACAAACTTATGAAGAGTAACGCTATCATAGTCCTTGAGACGTCAACCGTGATCCCCTTCAAATGGCACAGACAGAACTACCTGTGTTTCTTCTGCCATCTCACCTTTAAAGACACTGACTTACTCAAAGAACACACTATACATCAGCATAAGAAATCTAATATGAAAGCTGCTGTCTCATACTTGAGAAGAGACGAAAAAGTCAAAATTGATGTCTCTGTACTGCAATGTAGATCTTGCAATGATACTCGTAAATTCGACGATCTAAACTCCCTTATAGAACACTTGAAAGACACACACAACATTAAATTCACAGAAGAATGTGGCTACGGTCTTATTCCGTACTTTCTACAAAACGATGTCTACCATTGCGCAGTTTGTAAAGAAGAGTTCCAGTATTTCATGAAGTTAAACCAGCATATGAATGAACACTACGGGAATTACATTTGCGAGTTATGTGGCAAGTCGTTTCTAAGCCAGGATCGGTTACGATGTCATTCTCTAACACATGGTTCGGGATTCCACTGCAACTTATGTCCCGAAACATTCGATTCTCTGACCCAGAAGAATAATCACGAATCGAAAATCCATAATAAGGATAAACTTCTTAGATGTTTCTACTGTACTGAAACGTTTCAGAATTACAACCAAAGAAGGAGACATCATAACCTAATCCATGATGTCAAAGTCCCGGAGTTTTCCTGTCCAGTTTGCAGTAAAAGTTTTCAAATTATGAGCAAAATGAAGGTACATTTGAAAGAAGTTCATATAAGGGAGAAGAATTTCTCTTGCTCAATGTGCGAACAAAAGTTTTTTTCAAAGACGCATGTACAAAAGCACATGATCAAACATTTTGGCGAGAGGGTGCATCAGTGTGAAGTTTGTAAGAAGTCGTATGCAAGGAAGCAGACTTTGAGGGACCATATGAGGATACATAGCAATGAAAAGAAGTTCGTTTGTAGTGTTTGCAGTCAGGGTTTTGTTCAGAGTAATAGTATGAGGCTGCATATGAAGGTGCATCATCCTGAAGTGGTTACTGAATTAATATCCTAA
Protein Sequence
MEFDEIVVKESPGLCRCCLSEGCYKDLGSEYTWMNETEVYADMLLECFDISITQHNEGPNGPNRLICEVCITRLRDACNFKKQVMDSEKKFIDMIGRGEFRPKMLIYQTQMKCEDPNAVVASVEDADIEYLDDDIDFGDDDLKDELSQPSVSELPVAVATLPVKGKRGRPRKNTPVKPDKRAKVAKLDDKAKTSKTVAKGEKRRITEASSKSSMTSTKRNKLMKSNAIIVLETSTVIPFKWHRQNYLCFFCHLTFKDTDLLKEHTIHQHKKSNMKAAVSYLRRDEKVKIDVSVLQCRSCNDTRKFDDLNSLIEHLKDTHNIKFTEECGYGLIPYFLQNDVYHCAVCKEEFQYFMKLNQHMNEHYGNYICELCGKSFLSQDRLRCHSLTHGSGFHCNLCPETFDSLTQKNNHESKIHNKDKLLRCFYCTETFQNYNQRRRHHNLIHDVKVPEFSCPVCSKSFQIMSKMKVHLKEVHIREKNFSCSMCEQKFFSKTHVQKHMIKHFGERVHQCEVCKKSYARKQTLRDHMRIHSNEKKFVCSVCSQGFVQSNSMRLHMKVHHPEVVTELIS