Oinc018907.1
Basic Information
- Insect
- Orthosia incerta
- Gene Symbol
- -
- Assembly
- GCA_948252205.1
- Location
- OX411767.1:8609039-8636288[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.094 13 7.7 0.5 1 23 314 336 314 336 0.98 2 9 0.006 0.83 11.5 0.7 2 23 344 366 343 366 0.96 3 9 0.012 1.7 10.6 0.6 2 23 400 422 399 422 0.93 4 9 4.8 6.6e+02 2.4 0.4 3 21 436 454 435 459 0.92 5 9 0.22 30 6.6 0.4 2 23 510 532 509 532 0.94 6 9 1.2e-07 1.7e-05 26.3 1.3 1 23 547 569 547 569 0.98 7 9 9.8e-07 0.00013 23.4 1.2 1 23 575 597 575 597 0.98 8 9 0.23 31 6.5 4.4 1 23 604 626 604 626 0.95 9 9 0.00049 0.068 14.9 0.3 1 23 632 655 632 655 0.93
Sequence Information
- Coding Sequence
- ATGGGCATATGTTGGGAGTGCACTGCTAGGTTGCTGTCAGCCGCTTCATTCAGAACGAAAGCGCTTTTCAGCGATGCATTGCTGCAAGATCATTTGAAGAATAATGCTGATCTCACAATCACCGACATAGAAAACCTACATCGTCACCACACCATTCTAAAACCAACGATGGCGGTGCAAGAAGTTTTTAAATTCGATAATCACAACTCAGACGAACAGGTCCCAAACACTTTAATCAAATCAGAAGTCATACCAAATAACGAAGAAATAGAAATCGATGTAGGAAACTTAGTCAGCAATAAAATCACTATCAAAGATGAAAACAACGTAATTATTGAAGAGATTAACACTAATGGTGATGTGAAAACCGAAATCGATCTAATACCGACTGAATTGCAAGTCGGTGGCAGAGACGATTTTGATGATTTCAACGAAGATGATTGTCGTATTGTAGAAGAAAATGTATATATAAATGAGATGAAGGTTAGCTTGGATAATATTGTTTTGTTTAAAAGTGAGGGTAGTACAGATACAGTAAATATTTCAAACAATGTTGGGAAATTGGGACAGTCGTGCAAAGATATCTATAGTGATGATGTAGTAGATTTAATTGATGATGATGCAAAGGCGAATAAATCAGTTGTGAATGAAGACAAGAATAAAACTGAAGTTAAAAAGAAAAAAGCTGTGAAAAGAAAGGCGAAGACTGATGATGATGATGATGGCGTAATTATATGGGTTAAAGGAAAGAGACGAAAACCTTCAGATAATGAAATCCAGACCAATCAAGTCGAGATGAAGAAACAAGCTCACGTTAAACCCAGTACGCCGAATATACGCATAGACGAGAACATCTTCACCGTGAAAACGTTGAACCATGAAGATTTGAGGAGAGAGATACTTGCCAGGAGGGATAGTCACCAGTACAAAGAGGCGCCGTTCAAATGTGACGTGTGCTTCAAATGGTTTCCCACGGAGGATAAGCAGGCCAGGCATGTGCTCAAACATACTGAGAAATATGGATCGCTTCAGTGTGACATATGCCACGTTCGAATTGCAAAACCTCGATACATGCGCGCGCATATGAGAAGCCAACACACTTCAGAGTTTATATGTAAACTTTGTCCTATGGTCACAAGAAATCATAAAAAAACAACGTTACTGAATCATCAACGTTTAAAACACATGTCAGCCTGTGTATGTGAGTTGTGTGGCTATACGTTTGTGAGTGAAGCTGGAGTGAAGCTGCATAAGATCAAGAGGCATAAGCTGTTTGATAAAAATACGGAATTCACTGGACAGTTCTGTGAGATTTGCGAAGTGAAGTTCTTGACTGAGAAGGCTTACGACAGACATCTGCGGTTATCTTCCAAACATATTAAAGAAGATGACCCGAATCGTATGAGTAACGACCCGTCCCTCAAACAGCGTCGTCTCGGCGCATCGTACGTCGCGAGACAGTCGCGCTTAAGGCGCGCCGGCAAACACTGCAAACCGAACACCGAGCCAGCAGCTAACGGAACCATCACTTGTGAACAGTGTGGCGTGGTACTACAAAATAACCGCGCCTACGCGGCACACTTCAGACACTCGCACCCCGGCATCGATCGCACGCAGTTCGACAACATCACGACGCCGTACATGTGCGAGCATTGCGGCAAGGTTTTCAAAAACAAAATAAACCTATCTGCCCACATGTATGTGCACGGTGGTCAGAAACGTTTCCAATGCGACCACTGCAACAAGTCGTTCGCATTGAAGGCGAACCTCGCCGTTCATATGCAGCAACACCAGGCCGTAAGGCGGACGTACGACTGCCGTGTATGCGGGAAACACTTCTTGTTCAGCTTCAACCGCACCAGGCATATGTTTCTGCACACAGGCCTTCGCCCCTTCAAATGCGACGCGTGCGAGAAGACTTTCGCTACAAAAGGAGATATGCGCACTCACGTAGACTATGTACACTTGAAGAAATATCGACCCAAGCGCGACAGACGGAAGGTGAAGAAAGTTTAG
- Protein Sequence
- MGICWECTARLLSAASFRTKALFSDALLQDHLKNNADLTITDIENLHRHHTILKPTMAVQEVFKFDNHNSDEQVPNTLIKSEVIPNNEEIEIDVGNLVSNKITIKDENNVIIEEINTNGDVKTEIDLIPTELQVGGRDDFDDFNEDDCRIVEENVYINEMKVSLDNIVLFKSEGSTDTVNISNNVGKLGQSCKDIYSDDVVDLIDDDAKANKSVVNEDKNKTEVKKKKAVKRKAKTDDDDDGVIIWVKGKRRKPSDNEIQTNQVEMKKQAHVKPSTPNIRIDENIFTVKTLNHEDLRREILARRDSHQYKEAPFKCDVCFKWFPTEDKQARHVLKHTEKYGSLQCDICHVRIAKPRYMRAHMRSQHTSEFICKLCPMVTRNHKKTTLLNHQRLKHMSACVCELCGYTFVSEAGVKLHKIKRHKLFDKNTEFTGQFCEICEVKFLTEKAYDRHLRLSSKHIKEDDPNRMSNDPSLKQRRLGASYVARQSRLRRAGKHCKPNTEPAANGTITCEQCGVVLQNNRAYAAHFRHSHPGIDRTQFDNITTPYMCEHCGKVFKNKINLSAHMYVHGGQKRFQCDHCNKSFALKANLAVHMQQHQAVRRTYDCRVCGKHFLFSFNRTRHMFLHTGLRPFKCDACEKTFATKGDMRTHVDYVHLKKYRPKRDRRKVKKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00111949;
- 90% Identity
- -
- 80% Identity
- -