Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 7.1e-05 0.0097 17.6 1.0 2 23 7 28 7 28 0.98

2 6 7.8e-05 0.011 17.4 0.3 1 23 34 56 34 56 0.99

3 6 0.073 10 8.1 1.9 1 23 79 102 79 102 0.96

4 6 0.0004 0.055 15.2 0.5 2 23 138 160 138 160 0.95

5 6 1.2e-05 0.0016 20.0 0.3 3 23 168 188 166 188 0.98

6 6 1.4e-05 0.0019 19.8 2.2 1 23 194 216 194 216 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	7.1e-05	0.0097	17.6	1.0	2	23	7	28	7	28	0.98
2	6	7.8e-05	0.011	17.4	0.3	1	23	34	56	34	56	0.99
3	6	0.073	10	8.1	1.9	1	23	79	102	79	102	0.96
4	6	0.0004	0.055	15.2	0.5	2	23	138	160	138	160	0.95
5	6	1.2e-05	0.0016	20.0	0.3	3	23	168	188	166	188	0.98
6	6	1.4e-05	0.0019	19.8	2.2	1	23	194	216	194	216	0.98

Coding Sequence: ATGGGTGAAAAAACAGAAAAATGTGTAGTATGTGAAAAGACTTTTTTTAATAAGCTTAGTTTGAAATTGCATATGGCAACGCATTCTGCTGAAAAGAGGTTTAAATGTGAGGTGTGCGAGAGAGAGTTCCGATGGGAAAACAATTTAAGAGATCACATTAGGATACATACAGATTACGCCACATTAACTGCTTCCTACTACACAATAGAACACCAAGAAGACGGCTCTAAGAACTACGCCTGCACATCGTGCACGAGAAAGTACAAATCCCTCCCGAGTGTAGTTCAACATTATCGTCACGTACATCTTCGCTTAAGACCGAAGCTCCGATCATGTTACTTCTGCGAAGTCAAAGTCCCAGGGCACGCTCGAGCCTTTCATCTTGAAAAAGCACACGGGATACCAGCTCCGACATGTAATGCGTGCGGCAAAAAGTTCGCATACCCGTTTCAAGTGTTGCGACACCAAAAAAATGACCATATGGGAGAAAAAAAGTTCGGTTGCAGCGAATGCGAACTGAGGTTCACGTCACAGGCTAATCTGGCACAGCATATGATTAAGCATTCTAGTATTAGAGTACACAAGTGCGAGATTTGTGAGAAAGCTTTTAAGTGGAAGAAGAATTTGAGGACTCATATTATGATGCATATGGATGACAGAAGGCATTATAAATATAGACGTGCCTCGAAAAAATATTTCGCGTCACTCATCGCCAGCCGTCGTCCCGAGCGGTCGTCTCGCTGCCCGCTGCCGTTCCACTCGCCGTCCCGCTGCGAGCCCCCACTCATCGCTCCGTCTCGCTCCTGCGTGACGTCACTGCGGCCGACGCGCCCCGCGCTCGCCGCCCCACCGCTGCGCGCCCAGCGCCCCGGCCCCCGCCTCGTCTCGCTCCTGCGTGACGTCACTGCGGCCGACGCGCCCCCCGCACGCCGCCTCCCCGCTGCGCGCTCCGCGCCGCGGCATCACTACTAG
Protein Sequence: MGEKTEKCVVCEKTFFNKLSLKLHMATHSAEKRFKCEVCEREFRWENNLRDHIRIHTDYATLTASYYTIEHQEDGSKNYACTSCTRKYKSLPSVVQHYRHVHLRLRPKLRSCYFCEVKVPGHARAFHLEKAHGIPAPTCNACGKKFAYPFQVLRHQKNDHMGEKKFGCSECELRFTSQANLAQHMIKHSSIRVHKCEICEKAFKWKKNLRTHIMMHMDDRRHYKYRRASKKYFASLIASRRPERSSRCPLPFHSPSRCEPPLIAPSRSCVTSLRPTRPALAAPPLRAQRPGPRLVSLLRDVTAADAPPARRLPAARSAPRHHY

Sequence clustering based on sequence similarity using MMseqs2