Oinc011210.1
Basic Information
- Insect
- Orthosia incerta
- Gene Symbol
- -
- Assembly
- GCA_948252205.1
- Location
- OX411741.1:4406123-4407727[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0002 0.027 16.2 0.6 2 23 227 249 226 249 0.96 2 10 0.1 14 7.6 2.6 2 21 255 274 254 275 0.92 3 10 0.53 73 5.4 0.8 1 23 297 319 297 319 0.95 4 10 1e-05 0.0014 20.2 2.0 1 23 325 348 325 348 0.97 5 10 0.00057 0.078 14.7 3.1 2 23 356 377 355 377 0.97 6 10 1.2e-05 0.0017 19.9 0.9 2 23 383 404 382 404 0.98 7 10 0.00099 0.14 14.0 1.7 1 23 410 433 410 433 0.98 8 10 0.017 2.3 10.1 0.9 1 23 439 461 439 461 0.98 9 10 0.057 7.8 8.4 0.1 3 23 468 488 466 488 0.96 10 10 3.6e-06 0.0005 21.6 3.5 1 23 493 516 493 516 0.96
Sequence Information
- Coding Sequence
- ATGAGCGAGCAAACGAAGAATATTAACTGTCGAGTTTGCTTACGGTATGATCTAAAAAAATCCCAGAAATGCTTGTCGTTGTTTGAAAAATACAATAGTTCTTTGATAGCAGAAAAAATTAAGTACGTAGCAAACGTTGAGATTAAAGAAAACGATGGACTACCAAGTAGAATATGTCCAGATTGTTTATTGCAACTCGAAACGGCAATTGTTTTCAAGCAAAAGTGTGAAACGTCTGACAAGATATTGCAAAATATTGCCCAGCAGCCAGCTAATTTAAGTAAAATACCCTTCAGGGTTCCAGTTAAGAAGGAAGTAGAAGTAGTATTTGAAAATAGAAACGAAACGGAAACAACGAAACTCAAAATATCTAAAAAAGAAATAGTTCAACTTGATGTGGCTGAAAGTGAAAAATCTGCAGAAAAAACGACTCTTATTCGAAATGTTGTAAATAAAACGAATGTTGAAAATAGGGAACCAGCAGATATCTTACCCGTTAATTTAATACCTAAAGATGAAGAACCATATGAAGGAATTTCTGATGATGAACTTGTAATTGATAATCTAAAAAATGAAGAATTTGAAATCAAAACACTTGAGAATGAGAATGAAAATGATGAATCTCAAGCTATACTCACAGAATCGGGGAAACCAAGTAGAGCTATAGACTTAAAGCTGATTTGTGATGATTGTGGCGGTTCCTTTAAAAGTAAGTGTAAGCTTGCTGTCCACTGGAAAACTGTTCACCTACTCTCCAAGTTAGTTTGTCCAAGATGCAAACGGCAGTTCAAGTCTTTTAAAGCTTTCCATGTACATAAAAAAAAACAATCAATGAGTTGTCTAGCTGCCGCTAAAGTCCGCATTGAAGGTATGGGCAGGAAAAGAGTTTTCCACTGCAAAGATTGTGTATACAATACCACACGTATCAAGGATATGGATGCTCATTTGGTGATACACAGTGGACTCCGGCCGTATCAATGTAAGGATTGTTTGAAAACTTTCACTCAGCATGCCTCACTACAGGGACACATGGAGTCTAGTCACAAAAAATATAAGGTTGTGTCAACATGCCACTACTGCGGAAAAATCATAAAAGGCCGTAGTCAATTTTACAAACATTTGCGACAACATAAGCCTAAGACTGTACAGTGTGAGGTTTGTAAGAAAACATTAAAAAGTCGTGGCAGTTTAATCAATCATATGAAGAGACACACTGGTGTTAGAAGCTACACTTGTGAAATATGTTCCGCTAACTTTTATACAATGGCTGAACTTTGCAATCACCGAAAGAGGGTACACGCTAAGGCTAGATCTTTTAAATGCGACATGTGCGAATATGCAGCGTTCACAAAAGTAGCATTGAAAACTCATAAATCTAAACATACACCTACTAACGTAATATGTTTGCAGTGTGGTTTCTTTTTGGAAAATGAAGAGAAGTTAGCTATACACCAGAAAAGGCATTCGGAAAAGAATTTTTGCTGTTCTGAATGTGATAAAGGGTTCTTTCGTAGAGATTCACTTCGCAGGCACATGTTAAAGGTGCATGGGGAACCCAAAAAGATACCTAATTTTGTCATAACTTTGAATCCTATTATATCATAA
- Protein Sequence
- MSEQTKNINCRVCLRYDLKKSQKCLSLFEKYNSSLIAEKIKYVANVEIKENDGLPSRICPDCLLQLETAIVFKQKCETSDKILQNIAQQPANLSKIPFRVPVKKEVEVVFENRNETETTKLKISKKEIVQLDVAESEKSAEKTTLIRNVVNKTNVENREPADILPVNLIPKDEEPYEGISDDELVIDNLKNEEFEIKTLENENENDESQAILTESGKPSRAIDLKLICDDCGGSFKSKCKLAVHWKTVHLLSKLVCPRCKRQFKSFKAFHVHKKKQSMSCLAAAKVRIEGMGRKRVFHCKDCVYNTTRIKDMDAHLVIHSGLRPYQCKDCLKTFTQHASLQGHMESSHKKYKVVSTCHYCGKIIKGRSQFYKHLRQHKPKTVQCEVCKKTLKSRGSLINHMKRHTGVRSYTCEICSANFYTMAELCNHRKRVHAKARSFKCDMCEYAAFTKVALKTHKSKHTPTNVICLQCGFFLENEEKLAIHQKRHSEKNFCCSECDKGFFRRDSLRRHMLKVHGEPKKIPNFVITLNPIIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01118692; iTF_01117689; iTF_00111984;
- 90% Identity
- iTF_01118692; iTF_00111984; iTF_01117689;
- 80% Identity
- -