Oinc039738.1
Basic Information
- Insect
- Orthosia incerta
- Gene Symbol
- -
- Assembly
- GCA_948252205.1
- Location
- OX411762.1:13332214-13366255[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00017 0.023 16.4 1.2 1 23 267 289 267 289 0.98 2 13 0.091 13 7.8 3.8 1 23 297 320 297 320 0.93 3 13 0.86 1.2e+02 4.7 0.4 1 23 324 347 324 347 0.90 4 13 0.006 0.82 11.5 2.6 1 23 422 444 422 444 0.99 5 13 0.00012 0.016 16.9 2.7 2 23 453 475 452 475 0.96 6 13 2.1 2.8e+02 3.5 6.7 1 23 479 501 479 501 0.98 7 13 0.0011 0.15 13.8 2.1 1 23 506 529 506 529 0.98 8 13 1.4 1.9e+02 4.0 3.9 3 23 535 556 533 556 0.86 9 13 1.4 1.9e+02 4.0 0.0 3 20 577 594 576 596 0.93 10 13 0.051 7.1 8.6 0.2 2 23 710 732 709 732 0.94 11 13 2.8e-06 0.00038 22.0 0.9 1 23 741 763 741 763 0.98 12 13 0.0016 0.21 13.4 0.8 3 23 771 791 769 791 0.96 13 13 5.3e-06 0.00073 21.1 2.6 1 23 797 820 797 820 0.98
Sequence Information
- Coding Sequence
- ATGTATAATCTCAAAGCGTGTATGGTCTGTTTCAGCACAGATGTTAAATTATTTAGCATGAACAGTGGCAAATTACGAAAAGAATTCAATTTGATTTCTGGTATCCAGACTTCCCACGGGGATGGCATACCGGATTATTTGTGTTTTCAGTGTTCAGCTGTTGTGCGAAACTTCATAAGATTTCGCGATAGATGCCAACGGGCTCATTACGTTTTGAAAGAAATTTTAAGCAGAAATAAAGAGATCAGTCAATCAATTCTTAAAGACATAAACCGCAACCTCCTCGGTATCATGCCGCCCCTGTCTTTCATGAGTTTAGATAAAACTCACTATGAAAAACAGACGTTCCAGTGGAAAAAATCTAACCGCATTGATAGTAATTCTTCCAAACGTAACATATCTATACTTCACTGCAGCACGCTCACTCCTGAGTTCACATTTGATGGTGTAACAAATCCTAGTGAACTAGAATTTATAGAAGAGAAAATCAAAATAGATGTAGATGAAGCAGAACCTGAAGAAATACCAGTTGAGTTTGAAGTTGCCAAAGATGAGTCCAGTAACTTTGTCTGCAGTACAGAAGACGCTGAAATACCAGATTCATTTTTGGATAACGAGAACTTTGATAGTGATCAGGATATCGATAAATTCCCTGACTTGGGACTTAACATTGAGAATAATGTCAATGAGGTTATAGATGGGACGGATATGGACGAGGAATATGCTACATTGGTTCCGATTTCTGTAAAAGAAGCTAAAGCTGCGATTGAGGTGTACAAAATGTTCACTCAGGGTAAATACCATTGTGAAATATGCAATAAGGCTTATAACAATGCAGAAAGGATGAAGATACATTTACGCATGCATGATAAGCATATTAGCGGCAACTACCACTGTGGACTCTGCCAGTACTACTACAAGACTGAGTTCTTACTGAAGACTCATATGACTGATAAACATCTGTTTAAGTATTTGTGTAGGAAGTGTCCTGAAGTCAGTTTTGATAGATCATCAGCAAAACAGCATTACATCTGGACACACTTACAAAACGGCAGCAAAAAGGACGCTAACTGGTACGAGTCCAGACCGAAATGGATGCAAACTCGCGGAGGCAAACGCGTCAAGGGTGCGGTCACAATAAAACCTGTTAAAAAGAACAGGAAGTTACCAGAAGACTTCCTTATCTACTCTCCTATCGGTCATGAAGAACAATACCGGTTGGTGCAGGAGAGAGCGCAATCTAGGAACTATCAGGAAGCGAGGTACCAGTGTAATCTGTGCTATCGAGGGTTTAGGGGTATGCTGACTTATAATAAGCATATGAAGAAACATGATCCTGCACAAGCCGGTCCGTTACAGTGTGACATCTGCAAGATCCACTTCAAGGATCAGAGGAAGCTCTACAAACATATGAACATCACGCATCTGTTCAAATACTCCTGTCAGTTGTGTAGTTATGTGTGCTGTAATAGAGGTCAAGCTCATATGCACTATAGATGGCATAAGAACGTGACGTATGAGTGTCCTCATTGTAAGAGAGAATTCATGAAGGCTTCCACGCGTCTAACTCACATAAGAATAAAGCATCCGTCCATGTGTCTGTGCACTATTTGCGGGCACAGTTTTGTGAGCGATTCCGGGCTATATTGTCACAAACAAATTGCCCATACTGAAGAGGAGATAGATCAAAGCAATAAGATGGTGCTAAACACGGCTGATCCTAACTACTGCGCCGACTGCGAGATACAGTTCATGTCACTCGCGGCCTTCACCACGCATCTTGGGAGCTCCTACAAGCATGCTACTACTAACCTTTCCATCAAAACGGTGCGGCGCAGTAAGGCGGAGGAGCCGCGCGCCCGCGGCCGCCCCCGGCGCGGCGCCTGCTCCGAGATCGTCAACAACGGACTCACCACCTCCAGCACTTGTGAAGTGGTAACTGTGCACTTTATATATAAGTACCTGGGCGGTGCGGCGCCTGCTCCGAGATCGTCAACAACGGACTCACCACCTCCAGCACTTGTGAAGTGCACTTGTGAAGTGGTAACTGTGCACTTTATATATAAAGTACCTGGGCGGTGCGGCGCCTGCTCCGAGATCGTCAACAACGGACTCACCACCTCCAGCACTTGTGAAGTGTGCGGCAAGTTCCTATCAAACGACGTGCAGGCTCGCAAGCACTACGAGTCGGAGCACCCCGACACCGAGTACCTGAAGCGGTACATGTGCGACGTCTGCGGACACACTACCAGGCAATACGCGAACCTCATAGTCCACATGCGCACACACACGAACGAGAAGCCATACGGGTGTCCGCACTGCGACCGCCGGTTCAACATGCCCAGCAACAGGGACAGACATCTTGTTGTCCATACAGGTGAGAAGCGATATCAGTGTCAGCACTGCAACCGCCGCTTCACTCAAAGCAGCGCCGTCAAGCTTCACATACAGACTGTCCACCTCAAGATACCCTACGCGCCCTGGAATAAGAAGAACAGGAAGCGACGCAAGGAGTTAGAAACAGCGGGTATGTCGACACCGCTCATATTGCCGCCGGCGAACAAGATGTCCGTCTTCGACACTCCACCGGATTATCTCAACGCATACATCACTTATAACGACGACTAA
- Protein Sequence
- MYNLKACMVCFSTDVKLFSMNSGKLRKEFNLISGIQTSHGDGIPDYLCFQCSAVVRNFIRFRDRCQRAHYVLKEILSRNKEISQSILKDINRNLLGIMPPLSFMSLDKTHYEKQTFQWKKSNRIDSNSSKRNISILHCSTLTPEFTFDGVTNPSELEFIEEKIKIDVDEAEPEEIPVEFEVAKDESSNFVCSTEDAEIPDSFLDNENFDSDQDIDKFPDLGLNIENNVNEVIDGTDMDEEYATLVPISVKEAKAAIEVYKMFTQGKYHCEICNKAYNNAERMKIHLRMHDKHISGNYHCGLCQYYYKTEFLLKTHMTDKHLFKYLCRKCPEVSFDRSSAKQHYIWTHLQNGSKKDANWYESRPKWMQTRGGKRVKGAVTIKPVKKNRKLPEDFLIYSPIGHEEQYRLVQERAQSRNYQEARYQCNLCYRGFRGMLTYNKHMKKHDPAQAGPLQCDICKIHFKDQRKLYKHMNITHLFKYSCQLCSYVCCNRGQAHMHYRWHKNVTYECPHCKREFMKASTRLTHIRIKHPSMCLCTICGHSFVSDSGLYCHKQIAHTEEEIDQSNKMVLNTADPNYCADCEIQFMSLAAFTTHLGSSYKHATTNLSIKTVRRSKAEEPRARGRPRRGACSEIVNNGLTTSSTCEVVTVHFIYKYLGGAAPAPRSSTTDSPPPALVKCTCEVVTVHFIYKVPGRCGACSEIVNNGLTTSSTCEVCGKFLSNDVQARKHYESEHPDTEYLKRYMCDVCGHTTRQYANLIVHMRTHTNEKPYGCPHCDRRFNMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKELETAGMSTPLILPPANKMSVFDTPPDYLNAYITYNDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01117679; iTF_01118688; iTF_00111969; iTF_00974109; iTF_00772321; iTF_00952175; iTF_01231007;
- 90% Identity
- iTF_01117679; iTF_00111969; iTF_01118688;
- 80% Identity
- -