Oinc018530.1
Basic Information
- Insect
- Orthosia incerta
- Gene Symbol
- -
- Assembly
- GCA_948252205.1
- Location
- OX411767.1:1895727-1933232[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00024 0.033 15.9 3.1 1 23 229 251 229 251 0.99 2 12 0.12 17 7.4 0.3 3 23 260 281 259 281 0.96 3 12 1.9 2.6e+02 3.6 3.3 1 23 285 307 285 307 0.96 4 12 0.0075 1 11.2 1.9 1 23 312 335 312 335 0.95 5 12 0.016 2.2 10.1 0.5 1 23 339 362 339 362 0.96 6 12 0.06 8.3 8.4 2.8 1 19 374 392 374 394 0.98 7 12 0.00066 0.091 14.5 1.0 2 23 407 428 406 428 0.96 8 12 0.00054 0.075 14.8 1.7 2 23 433 455 432 455 0.96 9 12 1.8e-05 0.0024 19.5 0.3 2 23 475 496 474 496 0.97 10 12 0.0098 1.3 10.8 0.8 1 23 502 524 502 524 0.97 11 12 1.8e-05 0.0025 19.4 2.0 1 23 530 552 530 552 0.94 12 12 5.4e-07 7.4e-05 24.2 2.3 1 23 558 581 558 581 0.98
Sequence Information
- Coding Sequence
- ATGGAAGATTTACTAGCATGTCGGGTTTGCCTCGCTACGAGCGTAAATCTGTTTGATATGTACAAATATAAGCTCAAAAATCTTTTCGAAACATTCAGTGGAATTCAAGTGTCTCCGGCTGACAACTACCCACAATACTTATGCAGTTACTGCTGTGCGTTGCTACTCAAGTGCGAAGCCTTCAGGGAGAGATGTCGCAGGGCACAGGAACTGATGAAGTACGCTGAAATGAAGAGTAGCCTTCTGACGACCTCCCAGATCCACTCCATAGCTGTGTCGCACCACACTGGTCTGCCTCTTACGGTGTCCTCGCCGGAATCCGCCTGCATCACAGAGGTGCTGGTCAAGAGCGAGGATGAGCACCCCAGCGCTGACTTCGTACTCTTCAAGGAGGAGCTGGATTTCAGTGATGAAGAGCCTCTGGCTAACAAGGTAAAGAAGAAGCATCAAGATCATGCTATAGAAGTGGAGGTCCCTTCTATAGAGAAGGAGGATGAAGAAGATGGAGAATTCAAAGAGTTTGACGATGACAGGACGGACTATGATGTCAGTTTGTCTAACGTTGGATGTGACGCCGAGTTCGACTTGCCTAGTAACGATATTGAGGTAATATGTTTAACGGTAGAAGAGCAACTTAAGGAAGTGTTGGAGAGAAAGGAATCGTACAATTACATCAACTCGTTTTACAAGTGTGAACATTGCTATAAGGGTTTTATTCAAGACGGGACTTATAAGAATCATATGTTGCGCCATGACCCGTCTCACGGCAAAGAAATCTGTCCAATATGCAAAACAAGATGGCCGAATCTCCGTTCTTTAAAATCTCACACAACCACAGCCCACGAGAGGAAATACATCTGCAAACTATGTAGCCACGTCTCCAAGAGTAGTCACAGGGCGAAGGAACACCTCCAGTGGCATAAAGGTCATAAGTTCACCTGCAAAGTGTGTGGTGCTGTGTTCTCTAAGTCTACTAGCCATTTGACCCATTTGAGGCTGCAGCACCCAACGAAGTTCTGTTGTGAGGTCTGTGGAGAGAGTTTCCTGGGTGAAATTGGACTGAATATGCATATGAAGAAGTCACATAAGGGGAACGAGAAAGTCAACTTAAAGCCTCAGTTCAAATGTGCAGTATGCGAACAGTACTTTAAAACTATGGACGCCCTAAAACATCACTGCAATAGCTATGACAACGGTATTTGTGACGGCAGTCTATGCTCCTGTTTCCAATGCGGTGAGAACCTTCCCACACAAGATGCTCTCAGAGATCACCTCAAGACTCACGACGTTGGTGTCAAATGCGAAGAGTGCAACAGAACCTTTGCCCACGAGCGCTCGTTCTCCATACACTACCAGCGAGTACACCTGGGCATCAAGCTGAAGCATCACCCGCCCAGGGACAAGAGGAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATATCGAACGCTGCCTTAGTGTACCATCAGCGTACCCACACAGGAGAGAAACCGTTCCAATGTATTGAATGTCCGAAGAAGTTCAGTATATTTCAAAGATTACAGATCCACGTCCGCACGCACACGGGCGAGAGGCCGTTCAAGTGCTCCACTTGTCCGAAGGCGTTCAAACACAAGGCAGCGCTGAACAGGCACGACCGGGTCCACTCCGGGGCGAAGCCCTACCAATGCGGTCACTGCGGCAAGACATTCTCTCAGTCGAACTCCATGAAACTACACGTGAGGACCGTTCATCTGAAACTACCCGCGCCATACAGGAGTCGACGAGGGAACCAACTGGACGTGCTGGAGGGTGACGTCAGCTGA
- Protein Sequence
- MEDLLACRVCLATSVNLFDMYKYKLKNLFETFSGIQVSPADNYPQYLCSYCCALLLKCEAFRERCRRAQELMKYAEMKSSLLTTSQIHSIAVSHHTGLPLTVSSPESACITEVLVKSEDEHPSADFVLFKEELDFSDEEPLANKVKKKHQDHAIEVEVPSIEKEDEEDGEFKEFDDDRTDYDVSLSNVGCDAEFDLPSNDIEVICLTVEEQLKEVLERKESYNYINSFYKCEHCYKGFIQDGTYKNHMLRHDPSHGKEICPICKTRWPNLRSLKSHTTTAHERKYICKLCSHVSKSSHRAKEHLQWHKGHKFTCKVCGAVFSKSTSHLTHLRLQHPTKFCCEVCGESFLGEIGLNMHMKKSHKGNEKVNLKPQFKCAVCEQYFKTMDALKHHCNSYDNGICDGSLCSCFQCGENLPTQDALRDHLKTHDVGVKCEECNRTFAHERSFSIHYQRVHLGIKLKHHPPRDKRNKVPWVCEICGKKCISNAALVYHQRTHTGEKPFQCIECPKKFSIFQRLQIHVRTHTGERPFKCSTCPKAFKHKAALNRHDRVHSGAKPYQCGHCGKTFSQSNSMKLHVRTVHLKLPAPYRSRRGNQLDVLEGDVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01340526;
- 90% Identity
- iTF_01118658;
- 80% Identity
- -