Basic Information

Insect: Orthosia incerta
Gene Symbol: -
Assembly: GCA_948252205.1
Location: OX411769.1:8571491-8575039[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.003 0.41 12.5 0.7 1 21 72 92 72 93 0.96

2 14 0.13 18 7.3 0.4 2 23 121 142 121 142 0.95

3 14 0.0033 0.45 12.3 0.2 2 23 165 186 164 186 0.97

4 14 0.00031 0.043 15.6 0.1 1 23 190 212 190 212 0.97

5 14 0.061 8.3 8.3 0.1 1 23 217 240 217 240 0.80

6 14 0.0003 0.042 15.6 1.1 1 23 246 269 246 269 0.97

7 14 0.00082 0.11 14.2 0.2 1 23 342 365 342 365 0.97

8 14 0.13 18 7.3 0.2 2 23 392 413 391 413 0.96

9 14 0.51 71 5.4 1.3 1 23 435 457 435 457 0.97

10 14 7.2e-06 0.00099 20.7 1.4 1 23 461 483 461 483 0.98

11 14 1.1 1.6e+02 4.4 0.2 1 23 488 511 488 511 0.87

12 14 0.0063 0.87 11.4 0.6 1 23 517 540 517 540 0.90

13 14 0.0011 0.15 13.8 0.6 1 23 547 570 547 570 0.96

14 14 3.7e-05 0.005 18.5 1.9 1 23 577 599 577 599 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.003	0.41	12.5	0.7	1	21	72	92	72	93	0.96
2	14	0.13	18	7.3	0.4	2	23	121	142	121	142	0.95
3	14	0.0033	0.45	12.3	0.2	2	23	165	186	164	186	0.97
4	14	0.00031	0.043	15.6	0.1	1	23	190	212	190	212	0.97
5	14	0.061	8.3	8.3	0.1	1	23	217	240	217	240	0.80
6	14	0.0003	0.042	15.6	1.1	1	23	246	269	246	269	0.97
7	14	0.00082	0.11	14.2	0.2	1	23	342	365	342	365	0.97
8	14	0.13	18	7.3	0.2	2	23	392	413	391	413	0.96
9	14	0.51	71	5.4	1.3	1	23	435	457	435	457	0.97
10	14	7.2e-06	0.00099	20.7	1.4	1	23	461	483	461	483	0.98
11	14	1.1	1.6e+02	4.4	0.2	1	23	488	511	488	511	0.87
12	14	0.0063	0.87	11.4	0.6	1	23	517	540	517	540	0.90
13	14	0.0011	0.15	13.8	0.6	1	23	547	570	547	570	0.96
14	14	3.7e-05	0.005	18.5	1.9	1	23	577	599	577	599	0.96

Sequence Information

Coding Sequence: ATGCTCATATGTCATGCTGATTTTTTGGTCAGGGTACGGCGACAACGCTGTCAAACGAGCGACCAAAACGAAGGTGATTACGAATTAGAAAAGATTCCCAAGCCGAAGTATACCCGAAGTGCTAGAGCTGAAGCCAGGATTATCACCAAGAATAATGCTTCAGCTATCCTTGAGTGCTGGTCACTTCTGCCTTTTAGATGGAAGAAGAACAGATTTAAATGTGCTTACTGCGAAGAGAACTTTACTGAGTGTCAAGAACTGAGAGACCATGTCAGAATTTGTTCTACAAGTCACAGTATCAAGGACATCTATAGCAAATTCAAAGAAATGCCTTTAATCAATGTTGATATAACTGAAGCCGTTTGCACCCTCTGCTCACTGCCACTCACCAATGCCTCACAAATGAGAGAACATGTCATCCATCATGGCTTAGAATTCAATACGTACCACCCTGATGGTGTATTACCATTTTCTTTAGACAAACAGTCCTGGAGATGTGTTATATGCCCGGAAAAATTCAACAACTTTTTAAAACTTTACGAGCATATGAATATCCACTACCAGCATTATATATGCGCGACCTGTGGTAAAGGCTTCATGACCGCACCTAGACTGAGGAAACATTTAGAAGTCCATGTATCCGGGTCTTTTCCATGCAATAAATGTGGCAGGATCTTTATAATGAGAGCAGCAAGGGACTCACATAAAGCATCCGTCCATCCCAAAGCCCCAAGATACGAATGTCCGCACTGCAATATAAGATTCGATAACTATTACGAAAGGATCGATCATATGAAGAATGCTCACAGTTCCGCTACCGAAGCGGAGGGGAATCTAGGCCTTAGGCGCATTAGGAAGTTGAAGGAAAACGTTAGCGATCGCCAGATGCGCAGGAGACGACGCGCCAACAACCAGCTCCCCGAAGAATCGGAGAAAAGAATATCAAAAACTATGATGCGTCGAAACGCTCTCATCCTTCTAGCGTGTTCCACAGCCTGGGCCTTCCGATGGTTCCATAGCGCGTTTTACTGCTCATACTGCGACGCAAAGTTCGTTGATGTACCTCTTCTCCGCTCACATGTTAAAATTAACCATCTAAACGACTTACCCACAGATAGAATCTTTTCGAAGTTAAAAGAAAATAATATGGTTAAAGTAGACGTCGCTGAGCTTAGCTGTAGGTTGTGTAGCAGAATTTTAAATAGCATCGATACATTGAAAGACCATCTTCTCATACACGGAAAGACTTTAAATGTAGAATATAGTGATGGAGTCCTTCCATTCAAGTTGGATGAAGAAGGTTTCACATGCCAGCTGTGTTTCGCCCAGTTCCTGACTTTTGCCAAAATGAACGAGCACATGAACACTCACTTTCAAAATTACATTTGTGATTCTTGCGGTAAAGCTTTTTCTTCTAAATCGAGGTTTAGAAAACATGTACAGTCGCATGAAAAGGGAAGCTTCCCTTGCGGGGAGTGTGATGAAGTTTTAGAAACCCGAGCGTCTCGAATGTGTCACATAATGCGAATTCATAGGAAAGGAGTGCGCTACGCTTGTCCGAGATGCCCCGAAGTTTTTACGACGTATCACACAAGAGCGAAACATTTAGTTGAAACACACGCACAACAGAGAAAAGAATACTTTTGCAATGCTTGCGACAAGACGTTTGAAACGAGCTCCAAAAGGGCAGGTCACATTCGTGTTACTCATGCCAATGCAGAAAAACGACACTTCTGCCCAAACTGTCCCTCTATATTTGTGAGCAAATCGAAATTGCTGCGACATCTAAGAACACATAGAATTAAATACGATTAA
Protein Sequence: MLICHADFLVRVRRQRCQTSDQNEGDYELEKIPKPKYTRSARAEARIITKNNASAILECWSLLPFRWKKNRFKCAYCEENFTECQELRDHVRICSTSHSIKDIYSKFKEMPLINVDITEAVCTLCSLPLTNASQMREHVIHHGLEFNTYHPDGVLPFSLDKQSWRCVICPEKFNNFLKLYEHMNIHYQHYICATCGKGFMTAPRLRKHLEVHVSGSFPCNKCGRIFIMRAARDSHKASVHPKAPRYECPHCNIRFDNYYERIDHMKNAHSSATEAEGNLGLRRIRKLKENVSDRQMRRRRRANNQLPEESEKRISKTMMRRNALILLACSTAWAFRWFHSAFYCSYCDAKFVDVPLLRSHVKINHLNDLPTDRIFSKLKENNMVKVDVAELSCRLCSRILNSIDTLKDHLLIHGKTLNVEYSDGVLPFKLDEEGFTCQLCFAQFLTFAKMNEHMNTHFQNYICDSCGKAFSSKSRFRKHVQSHEKGSFPCGECDEVLETRASRMCHIMRIHRKGVRYACPRCPEVFTTYHTRAKHLVETHAQQRKEYFCNACDKTFETSSKRAGHIRVTHANAEKRHFCPNCPSIFVSKSKLLRHLRTHRIKYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00274620;
90% Identity: -
80% Identity: -