Oinc009083.1
Basic Information
- Insect
- Orthosia incerta
- Gene Symbol
- -
- Assembly
- GCA_948252205.1
- Location
- OX411747.1:32203531-32209272[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.01 1.4 10.8 0.5 2 23 241 262 240 262 0.97 2 14 0.42 57 5.7 0.2 6 23 274 292 274 292 0.95 3 14 0.13 17 7.3 0.1 2 23 303 325 302 325 0.92 4 14 6.8e-08 9.3e-06 27.1 1.0 2 23 348 369 348 369 0.97 5 14 3.2e-05 0.0044 18.7 2.6 1 23 375 398 375 398 0.96 6 14 0.0039 0.54 12.1 0.0 1 23 404 426 404 426 0.97 7 14 7.5e-06 0.001 20.6 3.0 1 23 432 454 432 454 0.98 8 14 0.11 15 7.5 1.8 1 23 573 595 573 595 0.95 9 14 0.0007 0.096 14.5 3.8 2 23 602 624 601 624 0.92 10 14 7.9e-06 0.0011 20.6 2.3 1 23 630 652 630 652 0.98 11 14 1.1e-06 0.00015 23.3 4.4 1 23 658 680 658 680 0.98 12 14 0.00019 0.026 16.2 0.3 1 23 686 708 686 708 0.98 13 14 9.4e-05 0.013 17.2 1.9 1 23 714 736 714 736 0.94 14 14 0.00093 0.13 14.0 1.8 1 23 742 765 742 765 0.95
Sequence Information
- Coding Sequence
- ATGAATACTGAAAGTATATTTATACTAAATCCTGACCCGAGTGCGTCTTCAGCCTCTACGCAGAGAATGGGCGCCCTGGTACCGTCGCCCTACTCACAAGTTAACCTTGATAATGTCAAAGACTTCTCACATGTGTGTCGGACATGCGCCAGCATCACAGAGTTTGTTATGCCCATTTACGCTGGTGAAGGGCTGCAGAACAACTTGGCTGATAAAATAACTAAACACTTACCAATACAGGTAACCGCGAGTGATGAGCTACCACTGGTGGTGTGCTACCAGTGCGCAAGCACCCTGCTGGCATGGCACGAACTGGTGAAGTGCTGCGTGCAGGCCGACTCCGCCCTGCGCGCTAAGCTTCGCTCTGTCCAACGGAAAAATAGACTGATCGTTAGCATTAAAACATCTCCAAGTATAGAAGAGGAAGCAGATAAGTTATTTTACACCAGTGTCAGAAACGCTCTCGTTGACTTTCATATTGATGTAGACGAAGAGGATACGGATATCGTTTGCCAAAAGTGTGACACCAAGCCAGCACTGACCACTGTGTGCAGCCTTGCTCACCATATCCGACATGACCACTCTCCTGAAATACTCGACAACAGTGTTAAAGCATTCATCACTGAACACGTAACATTTGAACAAGTGTTAGCAGAGGATTCTGACAGAGAAACAGTATCAGATACAAAAGAGAAATCTCCGATAGTTCTGCCGTCCTTGCGCTGTCCATTTTGTTCGAGTGTGTTCTCTTCGGCCACGCGGCTTGTGTACCATCTGAACAAGCACGTGGAAGTTAGCATGGCGGATGGCGTCATGTGCTGTGACGTCGTCTACAGCGACAAGAAACACTTCGTGCTACACTTGCAAGAGGCGCACGTCGACAGAACAGCCGATGAGCAAGTACAAGTGTGCGTTAGCTGTGGTTTCACGACTGAGACAGTCGACGAATTAAAACAGCATTATAAAGACGCGCATAACGATGCAAAAAGTACGAAAGAGAAGAAAACAGAGAGTCCAAACAATCAGAAGTACATCCCGGCGGTGTGTCCCGAGTGCAACAAGACGTTCTCCAACAAGTACAACATGTTCGCGCACATGCGCAGCCACACGCGCACCGACGTCTACCCGTGCGACAAGTGCTCGCGCACGTACCGCAACCAGGGGAACCTCACCCATCACAAGAAGCTTGCGCACCAGGGGATACTTAAGTTTATATGTGTCGAGTGCGGGGAAGCCTTCCCCAGTCGATCAGAACGCGACATACACGCGCGTATACACTCAGGAGAGACTCCCTACAAATGCCAGCACTGCGGCAAATCATACCGAGCAAAAAACACGCTCACACGACACCTAGAAATCCACGCAGACATACGCAAATACGAGAGCCCCTGCGACTTGCCCGAGGAGACACGCACTGCTTCTGAACTCTCCGAGCTGTCAGATGACGAGCCGCTGTCCACGTTTGCCACCAAAAAGCCTGTAAATCTCTATACCAACTTCTATAGAGCTCTTGTGAACTTTAGAGATCACTTTGTCAATGATCAACATCATGAGGATTACCCTGATTTCACAGACTCCAGTGTGTCTGATGCAGAGGAGAATGTTGTGGACAGGTTCGACGACCTGACGCAGAGCAACATGCGGCGAGACAGGCTGGACGAGGACACGCGGCGGGAGCTGAGTGCGGTGCAGCACAAGGTGGACAACAAGACGTACTACACGTGTGCGCTGTGCGGCAAGCGGCTCAGCTCGGCGCACACCTACGTGTTCCACAAGCGCATCCACACGGGCGAGCGGCCCTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCGCACGGCCTCACGCGCCACCTCACGGAGACGCACGAGCGCGTGCGCCGGTACAGCTGCCACCTCTGCGCCAAGAACTTCGCCAACTCGCAGAACCTCAAGCAGCACCTGCGGATACACACCGGAGAGAAGCCTTTCGTGTGCTCGCACTGCGGGAAGAGGTTCACCCAGAGTGGTTCGCTACACGTGCATCTGAAGACTCACAGTGAACAGTTTCCTTACGAGTGCGCGGAGTGCGGGGCTAAGTTCAGGCTGCGCTCGGGGCTAGTGCGGCACAAACTGAAGCACACGGGCGAGCGGCCGCACGTGTGCGCGACGTGCGGCAAGGGCTTCCGGCAGCGCCACGAGCTCACGACGCACACCGCCGCGCACAGCGGCGCCGCGCCGCACGTCTGCGCCGCCTGCCCGCGGGCCTTCCGCCAGCGCCGCGCGCTGCGCCACCACGTCAAGCGCGTGCACGAGGCCGAGCCGCACGAGCCGCCTGAGCCGAACGAGCCGCACCAGCCGCACGAGCTCGGCTACAGCCACGTGGCGCACTACTAA
- Protein Sequence
- MNTESIFILNPDPSASSASTQRMGALVPSPYSQVNLDNVKDFSHVCRTCASITEFVMPIYAGEGLQNNLADKITKHLPIQVTASDELPLVVCYQCASTLLAWHELVKCCVQADSALRAKLRSVQRKNRLIVSIKTSPSIEEEADKLFYTSVRNALVDFHIDVDEEDTDIVCQKCDTKPALTTVCSLAHHIRHDHSPEILDNSVKAFITEHVTFEQVLAEDSDRETVSDTKEKSPIVLPSLRCPFCSSVFSSATRLVYHLNKHVEVSMADGVMCCDVVYSDKKHFVLHLQEAHVDRTADEQVQVCVSCGFTTETVDELKQHYKDAHNDAKSTKEKKTESPNNQKYIPAVCPECNKTFSNKYNMFAHMRSHTRTDVYPCDKCSRTYRNQGNLTHHKKLAHQGILKFICVECGEAFPSRSERDIHARIHSGETPYKCQHCGKSYRAKNTLTRHLEIHADIRKYESPCDLPEETRTASELSELSDDEPLSTFATKKPVNLYTNFYRALVNFRDHFVNDQHHEDYPDFTDSSVSDAEENVVDRFDDLTQSNMRRDRLDEDTRRELSAVQHKVDNKTYYTCALCGKRLSSAHTYVFHKRIHTGERPCVCHVCGKQFRAPHGLTRHLTETHERVRRYSCHLCAKNFANSQNLKQHLRIHTGEKPFVCSHCGKRFTQSGSLHVHLKTHSEQFPYECAECGAKFRLRSGLVRHKLKHTGERPHVCATCGKGFRQRHELTTHTAAHSGAAPHVCAACPRAFRQRRALRHHVKRVHEAEPHEPPEPNEPHQPHELGYSHVAHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01230874;
- 90% Identity
- iTF_01117584;
- 80% Identity
- -