Oinc027410.1
Basic Information
- Insect
- Orthosia incerta
- Gene Symbol
- -
- Assembly
- GCA_948252205.1
- Location
- OX411769.1:8584075-8587715[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.3 7.3e+02 2.2 0.2 2 23 30 52 29 52 0.78 2 18 0.14 19 7.2 0.1 1 23 76 98 76 98 0.92 3 18 8.5e-05 0.012 17.3 0.2 1 23 102 124 102 124 0.98 4 18 4e-05 0.0055 18.3 0.4 1 23 129 152 129 152 0.96 5 18 0.0064 0.88 11.4 0.4 2 23 159 181 159 181 0.93 6 18 0.061 8.3 8.3 6.5 1 23 188 211 188 211 0.96 7 18 4.8e-05 0.0066 18.1 4.7 2 23 218 239 217 239 0.96 8 18 0.00012 0.017 16.8 1.7 1 23 245 267 245 267 0.98 9 18 0.48 66 5.5 0.2 1 22 413 434 413 436 0.79 10 18 0.0049 0.67 11.8 0.3 2 23 462 483 461 483 0.96 11 18 0.0077 1.1 11.2 0.3 1 23 505 527 505 527 0.98 12 18 4.1e-05 0.0056 18.3 0.1 1 23 531 553 531 553 0.98 13 18 0.00012 0.017 16.8 0.8 1 23 558 581 558 581 0.94 14 18 4e-05 0.0055 18.3 0.5 2 23 588 610 588 610 0.97 15 18 2.2e-05 0.003 19.2 0.3 1 23 617 640 617 640 0.98 16 18 0.00041 0.056 15.2 3.0 1 23 646 668 646 668 0.98 17 18 1.6e-05 0.0022 19.6 3.0 1 23 674 696 674 696 0.97 18 18 0.04 5.5 8.9 0.1 3 23 701 722 700 722 0.94
Sequence Information
- Coding Sequence
- ATGCACTTGTCCCATACTTTCGCTCCACTCAAGAGATTAGTGAATAATAGAAGAGAGAATGTCTTAAAAGTAGATGTTAGCGACATAACTTGCAAAATATGTTCGGATAAACCTCCAAGCCTGGTGGAACTCAAGCGCCATCTCAAAGAAAAACACGATAAACCGATGGATCTAGGAATCCAGGACAATATGATCCCGTTCAATCTTGAACTTGTAGACGATTCTTACAGATGCGTCATATGCGATCAGAACTTCATAAAAGTGCGCATTTTAGTGATACACATGAGTGAACACTTTAATAATTACAGTTGCGAGATTTGCGGGTCAGTCTTCATGACCTTACGGCTGTTGAAGAAACATTTGGAGGTTCATGACTCCGGAAACTTTCCTTGCGATCAGTGTAATAAAGTTTTTAGCACTCCTTATAAACGGACTTTGCATATCCGAGGCGTGCATTTGAAGCAGTGTCCTAGAAGATGCCCAATGTGTCCCGAAAAGTTCAATTCGAATTATAAAAGGACGATACACTTACAAGATGTCCATAATCAGGAAACTAGGGTACATAAGTGTAAGACTTGCGGCCGAGGGTTTAATCTGAAGTATCATTTAGTCTGTCACGTTCGTTCTGTACATCTTCAAGAGAGGAACCAGCAGTGTGATGTGTGTCACCAAAGGTTTTGTAACAAGGAGTCTTTGAAGCGTCATATGGTCATACATACTGGGGAGAAGAATCATAAATGCGACGTTTGTGGAATGGCGTTCTTGAGAAGGAAGAATTTAAAAGACCATTTGCGTTTGCATGATATAAGGATCATCCAGAGATCAAACTCAACGATCACTCTCAAAGATGAAGACGGAACAGAAATAAAACTAACAGTTCTCAAGTATCCAATTTCTTTAAACACTCTAGAATATGAAACGGATGATTTAGTTGCAAACGATAACTTTAAGGATGAAGAAAAAAAGAAAATTCACAAAAAGAAAGAGGCGAAACAGAACACCGTTAATTTGGGCCATATATCTTTATTGAAAGAACCAATTTCTATCAATAATGTTGATTGGAGAAACGATACTAATGAACAAGAAAATTGTATAACTTTCAATGTAAAAACTGTTCAAAAACGTGCACCAACTAGACAACGAAGCGAAAATATTGACAATGAAAAATGGAAACAAAATGCCTTGATCATCTTTGAAAACTCCTATGTCTATCCATTTATACACGCGGCTAACAAATACAAATGTGTCATCTGCTCCAAGCCTTTTCTAGACTCCAATATATTGAAAGATCATACTATAAACGAACACACAAGCTTAGAAATGAAACGAGCATTAAATAATAGGGTCAGAGAAAATCATCTCAAAGTCGACGTCACATATCTACAGTGCAAGATCTGTTTGCAATCACTACCTGATCTGCAGAATTTAAAAACGCATTTGAAGGACCATGGCAAAACAATAAAGCTGGAATTGCAAGACAATATAATACCTTTTAAGTTAGGAGGCGAGAATTTTGAATGCCAAATATGCGGGGAAAAGTATCTCAAACTAAGACTCCTAATAATTCATATGAGTAAACATTTCAACAACTACAGCTGTGAAATATGCGGTTCTGTATTCATATCATTGATTTTACTAAAAAGACATTTACAGATTCACGAATCAGGAAGCTATCCTTGCAATAAGTGTGATAAAGTTTTTACTAACTCCGCAAAAAGGACACTGCATTACAAAGGAGTGCATCTGAAGCAATTCCCGCGAAGATGCCCAATTTGTCCGGAAAGATTCAACTCAAATTACCAAAGGACCAAGCATTTGCGTATAGCTCATAATCAATCGTCGGGAATATATAGATGTGATACTTGTGGACGGGAATACGATTTGAAATACAATCTTCTCGTACACATACGGTCTGTTCATCTTCAAGAGAGGAACTTTGAGTGTCCACTTTGTAATTCGCGATTTTTCTCCAAGTACTGTCTTTCGAGGCATATGATTATACATACGGGGGAGAAGAATTTCAAATGTGAGGTGTGTGGGAAGGCGTATGCAAGGAGCAAGAATCTTCGACAGCATTGTAGGTCCCATGAGATTGGATTGTGTGCTATTTGTGGACTGAGCTGTGGGGACTATAATAATCTGGTTGCTCATGTAAATGGCGTGCATTGA
- Protein Sequence
- MHLSHTFAPLKRLVNNRRENVLKVDVSDITCKICSDKPPSLVELKRHLKEKHDKPMDLGIQDNMIPFNLELVDDSYRCVICDQNFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDQCNKVFSTPYKRTLHIRGVHLKQCPRRCPMCPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHVRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDIRIIQRSNSTITLKDEDGTEIKLTVLKYPISLNTLEYETDDLVANDNFKDEEKKKIHKKKEAKQNTVNLGHISLLKEPISINNVDWRNDTNEQENCITFNVKTVQKRAPTRQRSENIDNEKWKQNALIIFENSYVYPFIHAANKYKCVICSKPFLDSNILKDHTINEHTSLEMKRALNNRVRENHLKVDVTYLQCKICLQSLPDLQNLKTHLKDHGKTIKLELQDNIIPFKLGGENFECQICGEKYLKLRLLIIHMSKHFNNYSCEICGSVFISLILLKRHLQIHESGSYPCNKCDKVFTNSAKRTLHYKGVHLKQFPRRCPICPERFNSNYQRTKHLRIAHNQSSGIYRCDTCGREYDLKYNLLVHIRSVHLQERNFECPLCNSRFFSKYCLSRHMIIHTGEKNFKCEVCGKAYARSKNLRQHCRSHEIGLCAICGLSCGDYNNLVAHVNGVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01192954;
- 90% Identity
- -
- 80% Identity
- -