Oinc027494.1
Basic Information
- Insect
- Orthosia incerta
- Gene Symbol
- -
- Assembly
- GCA_948252205.1
- Location
- OX411769.1:9945785-9949749[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.11 15 7.5 0.9 1 23 32 54 32 54 0.95 2 24 0.21 29 6.7 0.0 2 23 82 104 81 104 0.89 3 24 9.7e-05 0.013 17.1 0.8 2 23 125 147 124 147 0.96 4 24 0.00017 0.023 16.4 3.8 1 23 152 174 152 175 0.95 5 24 0.00045 0.061 15.1 2.7 1 23 179 202 179 202 0.94 6 24 0.068 9.3 8.2 0.4 2 23 205 227 204 227 0.95 7 24 0.052 7.1 8.6 1.6 2 20 233 251 232 256 0.91 8 24 0.0081 1.1 11.1 3.3 2 23 301 323 300 323 0.93 9 24 0.0007 0.097 14.4 0.0 1 23 396 419 396 419 0.92 10 24 0.0022 0.3 12.9 3.2 1 23 462 484 462 484 0.96 11 24 0.019 2.6 10.0 0.1 3 23 513 534 513 534 0.96 12 24 0.0039 0.53 12.1 0.8 1 23 554 577 554 577 0.96 13 24 3.1e-05 0.0042 18.7 0.5 1 23 582 605 582 605 0.96 14 24 0.00077 0.11 14.3 0.9 1 23 610 633 610 633 0.96 15 24 0.00062 0.084 14.6 1.1 3 23 637 658 636 658 0.96 16 24 0.0091 1.2 10.9 1.4 2 21 666 685 665 686 0.94 17 24 0.011 1.5 10.7 0.8 1 23 740 763 740 763 0.93 18 24 1.9 2.6e+02 3.6 0.1 3 23 837 859 835 859 0.92 19 24 1.4e-05 0.002 19.7 0.1 3 23 866 887 865 887 0.94 20 24 0.0026 0.35 12.7 2.8 2 23 892 914 891 914 0.94 21 24 0.0081 1.1 11.1 5.1 1 23 919 942 919 942 0.96 22 24 1.8e-05 0.0024 19.5 5.0 1 23 946 969 946 969 0.97 23 24 0.00021 0.028 16.1 0.3 2 23 976 997 975 997 0.96 24 24 7.3e-06 0.001 20.7 0.6 1 23 1003 1025 1003 1025 0.98
Sequence Information
- Coding Sequence
- ATGACAAAGCACAGTGCTAGTTATCTAAGGAGGAGAAATCTGCAAATATTACTCAACAATACAACGTTGATACCCTTTAAGTGGCGAGGCAAATACCTTTGCTTCTATTGCGGAGACGATACGAAGACGCCCGATCGTCTCCGAAAACACACGAAAGGCCACGGACCTTGCAGTGATAGGGATAGAGCTTTACGACTAGTTAAATCAGCTGATGTAGAAATCAAAATAGATGTTTCCGAAGTTAGTTGCGAGATTTGCTCAGAAAGCTTCCCCTTTTTAGATGAGATTATCGATCATTTGATTTTTAAACACCAATTGCCTTATGAGAAAAATATAGAGATACTGTTAACAGCGTACAGACTCGTAGACCTTCAGTGTCTCCTTTGCGATAAAAGTTTCAACTTCTTACGTAAATTAATTAGCCATATGAACACCATTCATCCTAATAACAGCTTTGAGTGTTCCGAATGTGAAAAGACGTTTAACAAAAAGAGGGATTTAGATTCGCACTTGAGATTCCATCATAAGAAGTACCATTCTTGTACGAAATGCGATGAAACATTCCCAACGAACTCCGCGCTACACATGCATAGGTCTAACGCTCATTCATCCACGTGTAACATCTGCTTCCAAGTATTTTCATCAGACGGGAAGAGGTTAGCTCATCTAAAATCTGACCATGATACTGAACAAACTAAATGTGGATTCTGCAATAAAGTTCTAACAACAAAGCAAGCTTTTATAAGACATGCTGCAAATTGTGAACATAAACCTAAGGAAGAAGCCATCATAATTGATGATGAAGACAAAAAGATATCCGTCAAAGAAATACGAAAAGGTTTGGCAGCTATATTTAACATGACCACAGCACTTCCTTTCAAATTCTTTATGAATAGACTCAGATGTTTTTATTGCACGAGAGACTTCACCACTTGCGAGGATTTAAAGCAACATTCGTTGTCCGAACATCCTCACTGCGATATATCCTTCAAATCTATGAGGCTACGGAACAGATATGACGGTGTCCAAATCAAAGTTGATACTTCTGCCTTGTCCTGTAGACTATGCCACATTGCCTTGCTGGACTTGAACGATGTGATCGATCATTTGACCAAAGAGCATAAGGTGAAATGCGACATGACCGTCGAGAGTAATCTACAGCCGTTTAAACTAATTAAAGATAACTACCCTTGTCCTATTTGCGGTGAAGTGTTCAGGTACTTTGGCGTCTTATTGAAGCACGTTAGCGCGTCTCACAGTGGTAATAAACACATATATGGTCTGCCAGGACCGTACGAAGGCTGTACCTCTGAGCGACGACGGAAAAACTTGAAAATACTGTTCAACCACACAACCATCATGCCTTTTAAATGGCGAGGCAAATATCTTTGCTTCTACTGCGGAAAAAACTATACAGAATACACAGAATTTAGGAAACACACAAAATCCCATGGACTCTGCACCACTAAAGATTATTCCCTGAAACTAATCAAAGGGAATAACGTAGAAATAAAAATCGACGTCTCGGAGATCGGTTGCGATATCTGCAATGAACCCTTCAGCAGATTCGATGAAATAATAGATCATTTGATCTCGAAACACAATATGGAATACAACAAAAATATAGATATACCATTCCAGGAGTACAGATTAGTTGATTTTCGATGTTTGTACTGCGAGGAGCAGTTCTCTTACTTCGGATATTTGGTTAAACATGTTAACAACGTTCACCCACAGAACTGCTTCATTTGTGATGACTGTGGAGTTACTTTCAACAAGAAAAGGGATTTGTCTATACATTTAAGGAATTATCATCGACAAGGAGGATATCCATGTGATATGTGCTTGAAGAACTTCGAAACTCGCCTCATGTTGCGGAGACATCAAAATAATATGCATTTTAGGCACTGCAAGAGCTGTGGTTTACGGTTTGCGTCTCTTTCTCTCTTACAAAAACATGTACAAGTCGATCATCCCCAAAATGAGAACAATATGAAGTGTAGTTACTGTTCCAAAGAGTTCCACACTTCTTTAGGTTTAAAACAGCATATAAGCAAATGTAAAGTAAAAATCATTTCTCAGGTGGAACCCCAAACTTCTTTTCTAAACGACAGTAACATAGAACCAAAGAAAAAACAAAATATACTACAAATAAGACAGAATATACAGTGTGTACTTAACATGTCTACTGCTGTGCCTTTCAAATTCTTTTCCAAATACTCCTGTTTTTATTGTTCAAAGAAATTCGTAGAATTCGACGAGTTACGGGGCCATACCATCCTCGAACACCCAGTTTGCGATTTGAAGTCCAAATGCATGAAGAAATGCAAAGGAGAAAGGATAGCTGTCAAGATCGACATATCATCATTAGCTTGCAAATTATGTTGCCTTCCTATGCCTAACTTAGAAGATTTAATCAACCATTTGATAGCAGAGCATAAGGCGAACTATGACACTTCAATTACCGGGTGTTTGGAGCCTTTCCGGGTTATTAAAGACAACATGCCGTGTCCTTTATGCCCTGATACTGTGTTCCGATATTTCGGAATTTTGCTTCGGCATATGAACTCCGAACATAGCAATAACAATCGAATATGTGACTTCTGCGGTCGAAGCTTCCGGAACGCGGCGAATCTAAACGTACACATTACCTACGCACATACAGGTTCATGCGAATGTGACATTTGCGGCGTCAAATACAAGAACCAATGGTGTTTAGCTCGACATAGAGCGAGGACACACGACGCAAAGGACCATAAATGCCCAAAATGTCCAGAGCAATTCCAGTCTCAATATCATAAACAAAAACATTTAATAAAGATGCATAATGTTGGCCATAAATGTAGCTATTGCGGAAAAATGTTCACTAGGAACTCTTTTATGAAAGACCATGTGAGGAGAACACATTTGAAAGAAAAAAACATTCCATGTTCGATTTGTAATGAGAAGTTTTTCGATAATTATCTTCTAAGGATGCATATGGTGAAACATGAGGGTGATAGGAAATTCAGTTGTACTGTTTGCGGGAAAGCCTTTCTGAGACGTAGTAATTTGAGCTCGCATATGGAGATGCATAAAAAATATGGACATGTGCAGTTGTAG
- Protein Sequence
- MTKHSASYLRRRNLQILLNNTTLIPFKWRGKYLCFYCGDDTKTPDRLRKHTKGHGPCSDRDRALRLVKSADVEIKIDVSEVSCEICSESFPFLDEIIDHLIFKHQLPYEKNIEILLTAYRLVDLQCLLCDKSFNFLRKLISHMNTIHPNNSFECSECEKTFNKKRDLDSHLRFHHKKYHSCTKCDETFPTNSALHMHRSNAHSSTCNICFQVFSSDGKRLAHLKSDHDTEQTKCGFCNKVLTTKQAFIRHAANCEHKPKEEAIIIDDEDKKISVKEIRKGLAAIFNMTTALPFKFFMNRLRCFYCTRDFTTCEDLKQHSLSEHPHCDISFKSMRLRNRYDGVQIKVDTSALSCRLCHIALLDLNDVIDHLTKEHKVKCDMTVESNLQPFKLIKDNYPCPICGEVFRYFGVLLKHVSASHSGNKHIYGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYTEFRKHTKSHGLCTTKDYSLKLIKGNNVEIKIDVSEIGCDICNEPFSRFDEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDMCLKNFETRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVQVDHPQNENNMKCSYCSKEFHTSLGLKQHISKCKVKIISQVEPQTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRGHTILEHPVCDLKSKCMKKCKGERIAVKIDISSLACKLCCLPMPNLEDLINHLIAEHKANYDTSITGCLEPFRVIKDNMPCPLCPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01527571;
- 90% Identity
- -
- 80% Identity
- -