Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.1e-05 0.014 16.7 0.1 18 41 197 217 189 219 0.88

2 5 0.12 1.6e+02 3.7 0.2 18 41 225 245 221 247 0.85

3 5 0.016 21 6.5 0.8 16 38 251 274 241 274 0.77

4 5 0.001 1.4 10.3 0.6 18 40 281 300 277 304 0.89

5 5 0.47 6.2e+02 1.8 1.3 18 40 309 328 301 330 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.1e-05	0.014	16.7	0.1	18	41	197	217	189	219	0.88
2	5	0.12	1.6e+02	3.7	0.2	18	41	225	245	221	247	0.85
3	5	0.016	21	6.5	0.8	16	38	251	274	241	274	0.77
4	5	0.001	1.4	10.3	0.6	18	40	281	300	277	304	0.89
5	5	0.47	6.2e+02	1.8	1.3	18	40	309	328	301	330	0.82

Coding Sequence: ATGGTGAACAACGGCGGCTACCCGTACTACGAGCACTATGGCGGCGCGCCGCTGTTCCCCACGATGAGCGTCAACGTGTCCATGAACATGACCATGCACGGCTGTCCCCCGGAGCAGCTGTGCTCACAGATGCAATGGAACCAGAACGCTGCAGCGCCCTCAGTGAACGTGGTCTACCCACAAACGCAGAACGTGATCAGTTCCTCCACCTACCCATCAGCAACCTATTCCTTCACGGCGGACTTCCGAACACCTAACCAGAGCGACCCCCTGATCACCGCCACGTCTACCTTCAAACCAGTGCTGCAGAACTCTCAAAAACCAAACCCTAACTACTCCTTATTCCAGCAGAAACCGAACTACTCTAACCAGAAGGGTTTGAGTCAGAGCTTGAAGAGGCCTCCTTCGAAGCTATACGCTCAAGAGACGCAGAAGGAACAGAATATGGGTAGCGGGTATATTATCAATCAGGGACAGATGCATCCGCATCCTCAGGAGTATGGGTATGCAGCGTGCGTTAATTCTTCAGGGAAAGTACCGGTTGGAGCCCTAAGCACTTGCTCTGAAGATGACGAACAGAAGCCCAACCTCTGCCGAATCTGCGGAAAGACGTACGCTAGACCCAGCACCTTGAAGACACACCTTCGGACACATTCTGGAGAGAGGCCCTACAGATGTGGTGACTGTAATAAGAGCTTCTCGCAAGCTGCTAATTTGACAGCACATGTTAGGACCCATACTGGTCAGAAACCATTTCGGTGCCCAATATGTGATCGTCGGTTCAGCCAGAGTTCCAGTGTCACCACTCACATGAGGACACATTCTGGAGAACGACCCTATCAGTGCAGATCTTGCAAGAAAGCGTTCTCAGACAGCTCGACTCTAACGAAGCATTTACGCATCCACTCCGGAGAAAAACCATACCAGTGTAAATTGTGTCTGTTGAGGTTCTCCCAATCCGGTAACCTGAACCGCCACATGAGGGTCCACGGCAACATGTCAGGTGGAATCCTCGGCTGA
Protein Sequence: MVNNGGYPYYEHYGGAPLFPTMSVNVSMNMTMHGCPPEQLCSQMQWNQNAAAPSVNVVYPQTQNVISSSTYPSATYSFTADFRTPNQSDPLITATSTFKPVLQNSQKPNPNYSLFQQKPNYSNQKGLSQSLKRPPSKLYAQETQKEQNMGSGYIINQGQMHPHPQEYGYAACVNSSGKVPVGALSTCSEDDEQKPNLCRICGKTYARPSTLKTHLRTHSGERPYRCGDCNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYQCRSCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGNMSGGILG

Sequence clustering based on sequence similarity using MMseqs2