Oinc006199.1
Basic Information
- Insect
- Orthosia incerta
- Gene Symbol
- -
- Assembly
- GCA_948252205.1
- Location
- OX411748.1:3249204-3251342[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-09 2e-06 28.7 0.0 4 38 18 52 16 55 0.93
Sequence Information
- Coding Sequence
- ATGGTCCGCACATATAAAAGGACTACAGATCAGCATTCATGGCCAATGGAAGGAATGAAAAAAGCTGTACTTAGTGTTGTGGCGGGAGAAATGGGCTACAAAAAAGCGGCACATTTACACAACGTTCCACAGACTACATTAGAACGGTATGTTTCTAAATATCGGGCTAATCCGGACGATACTATGTTTCAAAAGAAGTTGGGCCATTTTAAAACCGTGTTTTCTCGAGATCAAGAGAAAGAACTAATAGAATACATAAAATTGATGGAAGCACGATTTCATGGACTGACTTCGCGTGACATGCGACAACTTGCTTTTGATGTGGCAGAAAAAAATAGAATCCCTCATAGATTTGATTCGAAGAGTGGTCTGgctggtatagattggttgaaaggattgctgaaaagacatccagatatcagctatagaaaacctgaaccaacatcagcagccagggccatgggtttcaatagagtatccgttggaaatttctatcaacttttagaaaagatttacgacgaacataagcttactccacaacggatctataatgttgacgagacaggtgtgtcaactgtccctaaaagtcactctaaaatcctggcttcctgtggtaaaaggcaggtaggaacattgacctctgcagaaagaggaaaattaatgaccacaattctttgcttcagcgcagttggcaattatatgccaccgatgttcatcttcccccgaaagcgtatgaaaccggaattgcttgatggagctccagctggatcttggggagaatgtcacgaatctggctggatccagggtcatttatttgtcctctggctaaagagattcattgagtggtcgcattccactaaggataatcgtgtactgttattgctagatggtcatgtaacacatgtcaaatctctcgaggtcattgatttagctcgcgaaaatggtgttattttactgtgctttccaccccattgcacgcaccgactccagccacttgatgtggggttcatgaagcctataagcacatattacgctaatgaagtaaaaaactggcttcggtgccatccaggacgcgtggtgacacaatatcagaccgctgcactattcggtaaagcttttgtatctgcagcaactatgacgactgctattaatgcatatagagccacaggaatttggcctatgaataaggatgtatttactgatgcagactttgCACCCGCGGAAACTACAGACAATCCTGAGCCTGAGCAGGTGTCCTTAATCGATGAAGCTATTTTGCAGGGTGATAACACGCCACTTACACAAGAACGTCTAGAAGTTGAGCCTGGTGAAAAGACTCTACCCAGACAACCAACCCCAACAAGGCAACTTCATCCACAACCTGGTATTTCTGGGGCAGCTTATAGACCCTCAACTTTTGCAACAACGCCAGAACAAATAATGCCCAGTGGTATTACTTGTTCTGATGTTGAGCCTGGTGAAAAGACTCCACCCAGACAACCAACCCCAACAAGGCAACTTTCTCCACAACCTGGTTGTTCTAGTATGACTGATAGACCCTCAACATTTGCAACAACTCCAGAACAAATAATGCCCAGTGGTATTACTTGTTCTGATGTTGAGCCTGGTGAAAAGACTCCACCCAGACAACCAACCCCAACAAGGCAACTTTCTCCACAACCTGGTTGTTCTAGTATGACTGATAGACCCTCAACATTTGCAACAACTCCAGAACAAATAATGCCACTGCCCAAGGAGAACAGAACAAACAAAAGAGTTACTAAGCGGAGAGGGAAAACAGCAATAATTACAGAGTCACCATACAAAAATGAGCTTATGGCCTTAAAAAAGGCCGCAGAATTAAAAGAACAAAAAAAAAAGAGGGTAGCTAAAGATTTGGAAGAATTTCAATCAGATAAACAAAAAAAGAGAAAGCTGATCAAAAAGAAAGGTAGCAAACGTTCCTTAGAAGATGATAACGATGCTGAATGCATATACTGTGGCTACTTGTGGTCAGAATCAACAGAGGGATGGATTCGTTGTATAAAATGTTCTCGATGGGCACACAACTCTTGTGCAGGGGAAGATGATGAAGATGACGAAGCTACTCATTTATGTGCAATGTGCGTCGAGGACTGA
- Protein Sequence
- MVRTYKRTTDQHSWPMEGMKKAVLSVVAGEMGYKKAAHLHNVPQTTLERYVSKYRANPDDTMFQKKLGHFKTVFSRDQEKELIEYIKLMEARFHGLTSRDMRQLAFDVAEKNRIPHRFDSKSGLAGIDWLKGLLKRHPDISYRKPEPTSAARAMGFNRVSVGNFYQLLEKIYDEHKLTPQRIYNVDETGVSTVPKSHSKILASCGKRQVGTLTSAERGKLMTTILCFSAVGNYMPPMFIFPRKRMKPELLDGAPAGSWGECHESGWIQGHLFVLWLKRFIEWSHSTKDNRVLLLLDGHVTHVKSLEVIDLARENGVILLCFPPHCTHRLQPLDVGFMKPISTYYANEVKNWLRCHPGRVVTQYQTAALFGKAFVSAATMTTAINAYRATGIWPMNKDVFTDADFAPAETTDNPEPEQVSLIDEAILQGDNTPLTQERLEVEPGEKTLPRQPTPTRQLHPQPGISGAAYRPSTFATTPEQIMPSGITCSDVEPGEKTPPRQPTPTRQLSPQPGCSSMTDRPSTFATTPEQIMPSGITCSDVEPGEKTPPRQPTPTRQLSPQPGCSSMTDRPSTFATTPEQIMPLPKENRTNKRVTKRRGKTAIITESPYKNELMALKKAAELKEQKKKRVAKDLEEFQSDKQKKRKLIKKKGSKRSLEDDNDAECIYCGYLWSESTEGWIRCIKCSRWAHNSCAGEDDEDDEATHLCAMCVED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01117126; iTF_01117127; iTF_01117128; iTF_00007018; iTF_00007019; iTF_00007020; iTF_00007021; iTF_00007022; iTF_00007023; iTF_00111568; iTF_01118225; iTF_00111570; iTF_01118226; iTF_00111571; iTF_01118227; iTF_00111572; iTF_01118228; iTF_00111573; iTF_01119253; iTF_00111574; iTF_01119254; iTF_00111575; iTF_01119255; iTF_00111576; iTF_01119256; iTF_00111577; iTF_00111578; iTF_01119258; iTF_00111579; iTF_01119259; iTF_00111580; iTF_01119260; iTF_00111581; iTF_01119261; iTF_01119262; iTF_01119263;
- 90% Identity
- iTF_01119258; iTF_01119259; iTF_01119260; iTF_01119261; iTF_01119262; iTF_01119263; iTF_01117128; iTF_01117127; iTF_00007018; iTF_01117126; iTF_00007019; iTF_00007020; iTF_00007021; iTF_00007022; iTF_00007023; iTF_00111568; iTF_01118225; iTF_00111570; iTF_01118226; iTF_00111571; iTF_01118227; iTF_00111572; iTF_01118228; iTF_00111573; iTF_00111574; iTF_01119254; iTF_00111575; iTF_01119255; iTF_00111576; iTF_01119256; iTF_00111577; iTF_00111578; iTF_00111579; iTF_00111580; iTF_00111581; iTF_01119253;
- 80% Identity
- iTF_01119258; iTF_01119259; iTF_01119260; iTF_01119261; iTF_01119263;