Basic Information

Insect: Orthosia gracilis
Gene Symbol: -
Assembly: GCA_947562075.1
Location: OX387276.1:12001243-12045187[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.12 12 7.4 1.9 2 21 279 298 279 299 0.94

2 16 0.03 2.8 9.3 3.8 2 23 362 383 361 383 0.95

3 16 4.9 4.7e+02 2.4 2.6 1 23 395 419 395 419 0.90

4 16 0.00011 0.01 17.0 0.3 2 23 426 449 425 449 0.97

5 16 0.18 17 6.8 0.4 1 23 455 477 455 477 0.93

6 16 0.0028 0.27 12.5 2.9 1 23 483 505 483 505 0.98

7 16 2 1.9e+02 3.6 0.3 2 19 516 533 516 536 0.87

8 16 0.061 5.8 8.4 0.2 1 23 615 637 615 637 0.96

9 16 1.7 1.6e+02 3.8 7.2 1 23 644 666 644 666 0.95

10 16 0.0012 0.11 13.8 1.8 1 23 763 786 763 786 0.95

11 16 0.00041 0.039 15.2 0.5 1 23 793 816 793 816 0.98

12 16 0.0032 0.3 12.4 0.2 2 23 839 861 838 861 0.96

13 16 0.00035 0.034 15.4 2.2 3 23 886 907 885 907 0.94

14 16 0.00013 0.012 16.8 1.3 1 23 932 954 932 954 0.97

15 16 0.0001 0.0097 17.1 0.1 1 23 960 982 960 982 0.97

16 16 0.00032 0.031 15.5 0.7 3 23 990 1011 988 1011 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.12	12	7.4	1.9	2	21	279	298	279	299	0.94
2	16	0.03	2.8	9.3	3.8	2	23	362	383	361	383	0.95
3	16	4.9	4.7e+02	2.4	2.6	1	23	395	419	395	419	0.90
4	16	0.00011	0.01	17.0	0.3	2	23	426	449	425	449	0.97
5	16	0.18	17	6.8	0.4	1	23	455	477	455	477	0.93
6	16	0.0028	0.27	12.5	2.9	1	23	483	505	483	505	0.98
7	16	2	1.9e+02	3.6	0.3	2	19	516	533	516	536	0.87
8	16	0.061	5.8	8.4	0.2	1	23	615	637	615	637	0.96
9	16	1.7	1.6e+02	3.8	7.2	1	23	644	666	644	666	0.95
10	16	0.0012	0.11	13.8	1.8	1	23	763	786	763	786	0.95
11	16	0.00041	0.039	15.2	0.5	1	23	793	816	793	816	0.98
12	16	0.0032	0.3	12.4	0.2	2	23	839	861	838	861	0.96
13	16	0.00035	0.034	15.4	2.2	3	23	886	907	885	907	0.94
14	16	0.00013	0.012	16.8	1.3	1	23	932	954	932	954	0.97
15	16	0.0001	0.0097	17.1	0.1	1	23	960	982	960	982	0.97
16	16	0.00032	0.031	15.5	0.7	3	23	990	1011	988	1011	0.95

Sequence Information

Coding Sequence: ATGCATACGGCGCTACCACGGGGAGATAGCGCAGTTATGTGGGACTCCAACCCAGTAAAACTCCACGGTGTCCTCCTGTCCCGCTTATGTCGTGAAGAAGGGCACGCGTTATCACTCATCCGTGAACCCGCCGCGTCTGTCCGCCACCGGACCTTCCTCTGGGGAGTACACCCCATTACCAGCGCACCAGAACACATTGCACGCCGTGAACACCCCAGGGCCCAAACCAACACAAGGGTGCCAGACGACCCCGTGTATGGCACACATGGTCCCTCTGTGACAGGTCATGTCAGTGGCCCCGCCACCTACCACTTTTCGGCCGCAGGGGATAGGGAGAGCGGTCAACGCTATACCGACACTCCTCTCCTGCGGCCCACCCCGTCCAGGCAGCGGAAGGTAGGGAGAGCAGCGCACCGCAATACCGGCACTCCTCTCGGGCCGCGGCCTCCAACCCTCAGACGCGATGCTTTCCATACGACATCGCGGCCTGCCGATAGATTGTTGATCGAAGCGTGTCTACTACTAGGTGATGCAGAAATTCCTCCTAAAGTGTCATCGCCTATTGCAAGGCGCACTAGAAGTTCTAGTAAAAAGGGAGATGTTGAAGAAAAAGAGGATGAAAAAACAGAGGAATTAAAGGCCGATTCTAATACAGAGGCGATGGAGCCACCCAGCATAAAAACGGAGGTAAAGCAAGAATGCCCGGACAGCAGTGAGGATGAGATCTGGATCCTTCAGACTTCTGATGCTGATGCCAGCCAGGAGCTTCAGAAACTGCTTTGTAGTACCAAGGTTAAAGAAGATGGACAGGACGGTGAAACCGAGAAAACACCAAAATGCTTCAATTGCAGCCAAATATTCAGAAACGCGGATGGCCTCTCAAGCCATCGCTGTAGAAGACGCTCTCGGAAGCGGAAGTCCAAAGACTTGGGCAACCTTATATGTATACCAACTGAGGAAGACTTCTTGAAGAGAGCTCAGGGACGACCCCGACCAGCCGATATATCAACAGACAATGATCTACTTGTTATACGTCCCCGAAAACGCCGCAGCCGGGAACCAACCTCAAACCCTCAGGTTGTGACCTGCCACAACTGTAACGAATCCTTCACGTCCAAAGTTCGCCTCAAGTTTCATATGCAGTTCCACGAAACCTCAAACCAAGCTCGCTCTGACGGGCGCTACTCTTGCTCCGAGTGTGACGGCGCCAATTTCTGCACGGAGACGGAGCTGTTCGACCACGTGCACTTCCAGCATGACAAGCAGAAGAGGTGGCAGTGTCCCGTCGAAGGCTGCGGGAAGACCTTCTTTCTCAGGGCAACCCTCACAAAACACAGTCGCACGCACACAGACACACGTCGGTATGTATGTGTCACATGCAACAAGCGGTTTTTGGACAAACAGACTTTGGATGAGCACGGAGTCACTCATTTGCAGATCAAACCGTTCCAATGCCACATCTGCCTGAAGCAATTAACCCGTCGCTCTCGGCTGAGGATGCACGTGCGCGCGCACGAGGAGGAGCTGACGCCGCGTTACGTCCGCGTCTGTGCCGTCTGCACGAGGGCCTTCAGAGACCATCTGCATGCACAGGAGCACGCATCAAAATCTACAGAATGTATCGAAGCGTTCGCAAACGAGTTGAAAGAAGAGGCGGAAGAGGTGTCAGTTCAGTTGTCGCCCACCAGTGGTCTAGTCAGACATACTGTGCAGATTGTTGAATCCCCAAAGCTATCAAAACCTATAAAACGCCAAGTCTCAAACGAAGTAGGCGAGCCACTCCTGTCTGAGTTAGCGGATGAGGCCAGGGCGCTTATACGAGTTGTCGAGATTGAGAAGGCGTTTCGATGCGAGTATTGTGAAGATGTATTCTACTTGGAAAGCGGTCTGAACACTCATCGCGTGATACATAAAGGAGTCAAGAATCCCTTCACCTGCCACATCTGTAAAGTTAGCTTCGCTACTTACTCCAGATGCACAACCCACAAAACAACCCACGGTTTCTACAAACGCTCCCTAGCCGACGCTAAGAAACAATCCGACGCCAAGAAACAAACCGACGGACCGCCACAAGCCAACGCCGACCATTCTGCTCGTTCTGCGGCTGGAATACTGGGATACGGCGACTTTCCTGTCGTCAAACACTTCCTATGCGAGGTAAAATTAGCTAAGAAACAAACTGACGCCAAGAAACAAACCGACGGACCGACACAAGCCGACACCGACTCCTCTGCTCTGTCTTCAGCAGGAATACTGGGATACGGTGACTTTCCTGTCGTCAAACACTTCCTGTGCGAGGACTGCGGCCGCTCTTACCTTCACTGGACGTACCTACAAGTTCACAGACGCATGAAGCACGCCAACGAAAACTTTCTGTACAAGTGTAATCAGTGCGAACTCACCTTTCCTAACAGCTGGGGTCTGGCGTACCATCGTAAGAAGGTGCACGGCAAGAGCGGAGCCGACGACCCTGGATCAGCCCCCAACAAGACGAGCAGGGAAGATTATAGGATACCTTGCCGGGATTGCGACGAGGTGTTGCCGAACAAAACAGCGTTGTATAAGCATCGGAAGAAGGAGCACAGCGATGGCACCCGGTCTTATACTAAACCAGGAATGTACCCGAATACAGAGTCAGAATGTACGGGCGGACCGTGTCCTCACTGTCCTGCTACATTCACGCACGCGACCGATCTCCATAAACATGTCAAGGAAATCCACGGCAAAGACGACGACTGCTGCGTCTCATGCAACAAGACTTCTAGCACGGATGCGTCCTGTCCGCGCCGGCCGCATGTGTGTCCCGTGTGCGGCCACGCGTTCCGCACGCTCTCTATGCGGAATGAGCACCTGAGAGTGCACACGGGCGAAAGACCTTTCCCTTGTGACGTGTGCGGAGTAGCCTTCAGGAGGTCGACGGCCATGCGCAACCATCGGCTGATTCACACCGGGGTGCGCGCGTGGGCGTGTGGGCGCTGTCCTAAGCGCTTCCGCATACGGTCCGACTTACGCACGCACCTAAGGCTCAAGCATCCCGCCACCATTGTCGTCGTTGAGATGGAAGGCCTGAATCCGTCGTCTGAAGAAGTACTGAAGGCGCTCGCAGCTCAAAACGTTCCACACGACAAGCTTATAGATATCACCAAGATGTCTTTTGTTAAGGGCAGCACGAGTGTGATCCCGTCGTGCGCGCGCGCCCTGTCCGCGCTCAACAACGTGCCGCGCACACACGTCGCCTGCATCAAGCCTACACCCGCACATATGTTGGAAGAACTGCCGGCCCGGCGAGGCCGCGGCATCGCTAAGAATCCGCGCAGACCCAAGATATTGCAGCGCGGGGAGATGGACCACGACACCACTGCCTACCCCATGGATGGCACAGAGGAGTTATCCGACCTGAACGTGCAACTGTTGCTTCGGGATGGCGCCCTAGTCAACGGCAATCAGATGGTACAACTGCAGTTAGACGACCCTATATTGATGGAGTag
Protein Sequence: MHTALPRGDSAVMWDSNPVKLHGVLLSRLCREEGHALSLIREPAASVRHRTFLWGVHPITSAPEHIARREHPRAQTNTRVPDDPVYGTHGPSVTGHVSGPATYHFSAAGDRESGQRYTDTPLLRPTPSRQRKVGRAAHRNTGTPLGPRPPTLRRDAFHTTSRPADRLLIEACLLLGDAEIPPKVSSPIARRTRSSSKKGDVEEKEDEKTEELKADSNTEAMEPPSIKTEVKQECPDSSEDEIWILQTSDADASQELQKLLCSTKVKEDGQDGETEKTPKCFNCSQIFRNADGLSSHRCRRRSRKRKSKDLGNLICIPTEEDFLKRAQGRPRPADISTDNDLLVIRPRKRRSREPTSNPQVVTCHNCNESFTSKVRLKFHMQFHETSNQARSDGRYSCSECDGANFCTETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCNKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELTPRYVRVCAVCTRAFRDHLHAQEHASKSTECIEAFANELKEEAEEVSVQLSPTSGLVRHTVQIVESPKLSKPIKRQVSNEVGEPLLSELADEARALIRVVEIEKAFRCEYCEDVFYLESGLNTHRVIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQSDAKKQTDGPPQANADHSARSAAGILGYGDFPVVKHFLCEVKLAKKQTDAKKQTDGPTQADTDSSALSSAGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCELTFPNSWGLAYHRKKVHGKSGADDPGSAPNKTSREDYRIPCRDCDEVLPNKTALYKHRKKEHSDGTRSYTKPGMYPNTESECTGGPCPHCPATFTHATDLHKHVKEIHGKDDDCCVSCNKTSSTDASCPRRPHVCPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWACGRCPKRFRIRSDLRTHLRLKHPATIVVVEMEGLNPSSEEVLKALAAQNVPHDKLIDITKMSFVKGSTSVIPSCARALSALNNVPRTHVACIKPTPAHMLEELPARRGRGIAKNPRRPKILQRGEMDHDTTAYPMDGTEELSDLNVQLLLRDGALVNGNQMVQLQLDDPILME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -