Ogra020176.1
Basic Information
- Insect
- Orthosia gracilis
- Gene Symbol
- -
- Assembly
- GCA_947562075.1
- Location
- OX387268.1:38460625-38477464[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.00027 0.025 15.8 2.6 1 23 202 224 202 224 0.98 2 28 0.00039 0.037 15.3 0.3 2 21 253 272 252 273 0.92 3 28 0.0003 0.028 15.6 0.1 3 23 305 326 303 326 0.96 4 28 0.027 2.6 9.5 0.3 1 23 376 399 376 399 0.96 5 28 0.15 14 7.1 0.3 1 23 418 440 418 440 0.95 6 28 0.0023 0.22 12.8 3.9 1 23 478 501 478 501 0.94 7 28 0.0097 0.93 10.9 3.7 2 23 541 563 541 563 0.97 8 28 0.007 0.67 11.3 0.5 1 23 613 636 613 636 0.97 9 28 0.0039 0.37 12.1 0.2 1 23 688 710 688 710 0.97 10 28 0.00058 0.055 14.7 5.9 1 23 721 743 721 743 0.99 11 28 0.062 5.9 8.3 0.6 2 23 755 776 754 776 0.95 12 28 0.0028 0.27 12.5 1.4 1 23 786 808 786 808 0.98 13 28 1.6 1.5e+02 3.9 7.3 1 23 837 859 837 859 0.94 14 28 0.00053 0.05 14.8 2.6 1 23 870 892 870 892 0.97 15 28 1.5e-05 0.0014 19.7 1.1 1 23 900 922 900 922 0.98 16 28 0.0003 0.029 15.6 0.3 2 23 942 964 941 964 0.97 17 28 1 95 4.5 0.3 1 23 982 1004 982 1004 0.90 18 28 0.0059 0.56 11.5 3.2 2 23 1044 1066 1043 1066 0.95 19 28 0.014 1.4 10.3 0.2 2 23 1089 1110 1088 1110 0.95 20 28 1.3 1.2e+02 4.2 3.6 2 23 1153 1175 1152 1175 0.95 21 28 0.0023 0.22 12.8 0.2 2 23 1191 1212 1190 1212 0.95 22 28 0.43 41 5.7 4.8 3 23 1220 1240 1218 1240 0.96 23 28 0.014 1.3 10.4 0.8 2 23 1251 1273 1250 1273 0.95 24 28 0.066 6.3 8.2 3.6 2 23 1290 1308 1290 1308 0.94 25 28 0.96 91 4.6 1.5 2 20 1312 1330 1311 1332 0.91 26 28 0.35 33 6.0 1.0 2 23 1381 1402 1380 1402 0.93 27 28 0.012 1.2 10.5 1.1 2 23 1413 1435 1412 1435 0.95 28 28 1.7 1.6e+02 3.8 0.6 2 23 1451 1469 1450 1469 0.79
Sequence Information
- Coding Sequence
- ATGGCACTCAAGCTTGGAAAATGCAGGCTTTGCCTCAAGCTCGGCGACTTTTACTCTATCTTCACGATCGACAATGCTTTGCAGCTCGCGGAGATGGCAATGGAATGCGCCCGGGTGAAAATATACGAAGGCGATGGGCTGCCTGATAAGGTGTGCTCGGAGTGCATACAGAAGCTCAGCAGCGCGCATATCTTCAAGCAGCAGTGCGAGCGAGCTGACCAGGAACTGCGCCGCAACTATGTGCCTCCTCCTGGATTCAGCATTAGTCCACCGCCACCTAACAGACAGAGCAGTGATTCCGCCTTTTCAAATCATACCGATACCTCCAACTTGACCAAACCCCCGTCGATCATCGAAGAAAAAGTTACCCCCGCCGCCAGAACCCGCAAACGTAGTGCCGACAGCGTCGACAATGCATCCACTGGAGGCGCCTCCAGCGACTGCCGCCCAAGCGGCTCCAAGCGCGTCGAGGAGCTCCGACGCACCCACAAGAAACCCAGAAGACTGTCAGGACACGTCTCACAATTTGATTCAGATTACGAAGACAACAGCGCCTCGTACTTAGCTGAAACAGATTCCGACGAGCCCTTACTAAAAAATAGCTTCAATTGTGATGAATGCCCCAAACATTTCCAGACCCAAAGAAGTCTCTCTGTCCACAAGAGAATACACGAAAAAAAAGAAAGCCTTGGCGAAAATGCCGTCGTTGATATACCGTGGCAGACAGAGGACGCGACTGACGTAGAGGACAAACTGAACTGTGGCAAATGTGGCAAGACTTTCAAGTTAAAGATCATGTTGAAACGTCACCAGGAAATATGCGGGAAGACTACAGGTCCTGTCAAGATTCTGCAGAAAGAGTTGCTCATCTCCTTAGAACCAATTGACGGCATGAAGAACCTGAACATTGCATGTGAAATGTGTTCTGCCAAATTCAAGTCTGTTGATAATTTGGCGAAGCATATGAAGGTAGTTCATGCTGCCGTCTTGAAAAGAGAAAATGTTCAAGAACAGGAAAAAAGAAAGGTGTCAGTTCCATGCATGTTCTGCAAAAAGCAGTTCGACGATTACTATGTTCATAGTGCACATTTGAACAAATGCGCGAAAAGGGACGACTCTATGCCATTTGAGTGTCCCATTTGTAAGAAGGTGGTGTTGAGAAAGGCTTCTTATATGCTACATCTTAAGAACATGCATTTTGAGCCTCGAATGTCGCATAAGAGTTCAGTGGAGACTGAGGCGCAGGAGTATCACGAATGTAGGATGTGCTTGAAGAAACTTCCATCCCAAGAGCTGCTGATCACGCATTTAGCAGCTCACATGTCCAACATTGATGACAATGAAGGTGGAGCTGACAATGAATCTAGGGCAAGCACTATAGACGATGGAGTGTCCATCCAATCAGTGCACAGCCAAGCTTCCACTGGTCAATTTAACTGTCAAACATGTGATAAAGAATTCAAATATAAGAAAGCTCTACAAACACACGAGGCTAGGTGCCATTCTGAAGTACCTGTGCAGGTGAAGGTAGAGCCACCTGATAAACCGTCGACGAGTCTTCTAAGTGAGTCAGTCTATAGACAAACTGAGTCAGAATCTAGTCAGGAAGAGGAGGACAACACGTGTGATATCTGCGAGAAACAGTTCTCGTATCGCCGGGTGCTGCTGCACCACAAGAGAACTAAGCACAACATGAGCTCAGGACATAAACGCGCCAAAATCTACCTCAAAGACTGCTCCGTACGCTGCCTCATCTGCGACCTCGATATGAAAGTAGGAGCGATTAACGAACACAATCAAACCCATATATCAAAGAACATGAGGCCTAGGAACCTCTACACATGCGCCGAGTGCGAGGACAACTTCAAGAGCTGTTCTGCTCTTGCTAACCACATAAAGCTGATTCACAGATTAAAACAGAAGCAGATCGAAGATACCGTGAACCCATCGGATTTTTGTGAAGTCGTTGTGACCAAAGCGGAACCCCTGGACTTTATCCAGAGTCACAACGACTTTGGCGAGGTTCCGGGCGACAGCAAGCCGCTAGTAGATCTGAGCGGATTTACCTGTCCCATCTGCAGTAAAAAGATGCCGACTCTCATATCCTTGAAGAGGCACGTCAACTGGCACACCAATGTAGGCAATAATGTGGAGAAGAAATACGAGTGTAGCGTCTGTAAAGAGGCCTTCAGGTTTCAGTGCCACTACAAGATCCACATGCGCTCGCACTACACGGACCCTAACCTGGACCCCGTGCATCTGACGTGCGCCACGTGCGGACGCGTCAGCAAGCACCTCCGCGCCGCGCAGGCGCACATGAACTTCCACAAGCAGACGCGCTTCCAGAACAAGGACTACCAGTGCTCCATCTGCGAGAGAGTCTTTCAGCATCGCAAGGTCTACCTCTCCCATATGGCCATTCACTACAAAAAAGGCGACAGCGTTCAAAACACCATCATAGGCGACGTCATGCCCAGCAACGCTGACAGAAGCATCTTCGACGGCACGCACACCTGTCACCTCTGCGGCAAAGTCTGCGACTCAGAAAACTCTCTCAAATGTCATCTGAGCTGGCACAACTCCAAAAGTTTCCTGTACGGCGCCCGCCACGAGTGCACCATCTGCAAAGTGAAGTTCACTAACAAACGGACACTAGAGCTTCACACCCGAGCACACTACGAAGACGAAAATGGTCCCTACAAATGCACCATTTGCGGCAAAGGGTACACCGACGAAAAGTACTTCCAAAGACATGTGAAAGGACACAACTTTGACAATCAATCCCACAAAAAAAGGATCGACAAAATCAGAAAGGATAAAGTTAAATGTCCTATATGTTCGCGGTTCTACCCTGACTTGGTGAAGCTGATACGTCACCTGCGGCGCACGCACCCCGAGAGCAAGATGATCAAGTCCGACCCCGACGCGCCGCCGCCGCTCTACTACTCGTGCAAACTGTGCGCCAAGGTGTTTCTAGACGAGCGAAGACTGCAGTCCCACGAGGAAGCTCATTTAAGAAAGCCAGAGTTCTTTAAATGCAAGTTCTGTGGAAAGAAACATATATCGCTAAAAAGCCACACGATCCACGTCAAGGGCCACTTGGCGCAGAAACATTACGATAACCCGCTGAAGTGTCCGCACTGCGACGAGAAGTTCGTGAAGGGTTACGGGCTGCATCACCACCTGCGCGACGCGCACAACATCAACGAGAACTGGATCGCCGAGCGCTCAGAGCTGCCGCTGTCCGGCCCGCTAAAGGACCTTCAGTGCTCCATCTGCATGAAGGTGCTCGCCAGCAAGGGCAACTACGAGCGCCACATCGACTACCACAACTCCTTGAGATGTAATTACTGCTTCGACTACTTTAGCTCTCTCAGGTTCCTAGAGGGACATCTCGTGTTTGCGTGCGAAAAGAAAAAGCTTTTAGGCGATACCGAAGTTTACCCTAAGAAAGTTAAATGCAATATTTGCTACAAAGCATTCCATGTACAAGTGAAACTAGACTGCCACTTGCGCACGCAGCACGGCATCATAGTAGACAGGGAGCAGAGAACTGGCAAGCAAGAGATTGTCTGTGATTATTGCTTCAAAGTTTTCGAAAACGAGTATGCTCTAAGTACTCACAAGATTTACCATCGCACAATTGGCTACTACGGCTGTTTATACTGCAAAAAGAAGTTTAACACTCTGACTGTATATCGGAAACACAAGAATCATCATATGGCGCAACTAAATGTAGATAACCCGACGAAATGCGAACATTGTGACGAGACCTTTGTCGCTTTCAGGGAAATGATATACCACATGAGGGACGTGCATGGAGACGACAAGGAATGGTTCACAGAACCCAAAGAATCAATCGAGGAGACCTGCCCCATCTGTAACAAACGATTCTACAATCTTCACAAGCATATGACTTACCATGAAGAAAACAAGTGCAAGAAATGCAATGAATACTTCTACTCCAGGGCTGACTTCGATGGTCATCTTTGCGCTATTGAAAGTGATGAAGAAGGCACGGCATACGTGGGTACCGAGGGAACGTTCCAGTACGAAGAGTGCAGGTTCTGCTTCAAACCAATCACCAAGAAGAGCACCAAGCGGCTTCACGACCAGATACACAAGGGCTCCGGCTCTATATCCTGTAGATTCTGCTCAATGAAGTTTAAAACTATGGACGCCTTTAACATACACGCTTTCTCGCATAGAAGTAGAAAGTACAATAAGAAGCCGATAAAATGTCGGAAATGCGGCGAAAAGTTCTTTAAGTACGGACCATTCATGAAGCACATGAAATTAGTTCATAAGTGTATGAAGAAACTTCATTACAGAGCAGTTGTGAAGCCGGACAAATGTGTTGTTTGTGGAGAGGAGTTCCCGAACTTGCACAATCATTACCGCGCACATCTTCTGAACCAGTGTCAGGCTTGTCTCAAATACTTCACTTCGTACAAGGTGATCTCTGCGCACGAGTGCGACAAAGAGGACTCCGACCCGTCGAAGGTGTTCACATGTGACGCGAACTTGAACGAACTGATCAAAACATATGTTCCTATGGATGAGAAGGATGATGAGAAGTACTACGGCCACACCGATGTCGATGAAGAAGAAGAAGACGATATAATGCCACAAGTAGTTGGAGAGGAAGAGGAAAGTCAGGAGAGTCAAGAGTTTAAAGACATCCCTATGCTCCAGTCGCCGATAATATCGGATGTGCTGTCGCTGTACAAAGCAGAGATAAATGGCTTGGGTGTGGTGGATGGCGTGGTGAATAACATGGTGGATAACATTAATGAAGTGGTCGATATAACAGATGACGACTCGGTGGATGTTGACGATTCCGTTATACCAGTGGTTGTCGTTATAGATGATGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTIDNALQLAEMAMECARVKIYEGDGLPDKVCSECIQKLSSAHIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSNHTDTSNLTKPPSIIEEKVTPAARTRKRSADSVDNASTGGASSDCRPSGSKRVEELRRTHKKPRRLSGHVSQFDSDYEDNSASYLAETDSDEPLLKNSFNCDECPKHFQTQRSLSVHKRIHEKKESLGENAVVDIPWQTEDATDVEDKLNCGKCGKTFKLKIMLKRHQEICGKTTGPVKILQKELLISLEPIDGMKNLNIACEMCSAKFKSVDNLAKHMKVVHAAVLKRENVQEQEKRKVSVPCMFCKKQFDDYYVHSAHLNKCAKRDDSMPFECPICKKVVLRKASYMLHLKNMHFEPRMSHKSSVETEAQEYHECRMCLKKLPSQELLITHLAAHMSNIDDNEGGADNESRASTIDDGVSIQSVHSQASTGQFNCQTCDKEFKYKKALQTHEARCHSEVPVQVKVEPPDKPSTSLLSESVYRQTESESSQEEEDNTCDICEKQFSYRRVLLHHKRTKHNMSSGHKRAKIYLKDCSVRCLICDLDMKVGAINEHNQTHISKNMRPRNLYTCAECEDNFKSCSALANHIKLIHRLKQKQIEDTVNPSDFCEVVVTKAEPLDFIQSHNDFGEVPGDSKPLVDLSGFTCPICSKKMPTLISLKRHVNWHTNVGNNVEKKYECSVCKEAFRFQCHYKIHMRSHYTDPNLDPVHLTCATCGRVSKHLRAAQAHMNFHKQTRFQNKDYQCSICERVFQHRKVYLSHMAIHYKKGDSVQNTIIGDVMPSNADRSIFDGTHTCHLCGKVCDSENSLKCHLSWHNSKSFLYGARHECTICKVKFTNKRTLELHTRAHYEDENGPYKCTICGKGYTDEKYFQRHVKGHNFDNQSHKKRIDKIRKDKVKCPICSRFYPDLVKLIRHLRRTHPESKMIKSDPDAPPPLYYSCKLCAKVFLDERRLQSHEEAHLRKPEFFKCKFCGKKHISLKSHTIHVKGHLAQKHYDNPLKCPHCDEKFVKGYGLHHHLRDAHNINENWIAERSELPLSGPLKDLQCSICMKVLASKGNYERHIDYHNSLRCNYCFDYFSSLRFLEGHLVFACEKKKLLGDTEVYPKKVKCNICYKAFHVQVKLDCHLRTQHGIIVDREQRTGKQEIVCDYCFKVFENEYALSTHKIYHRTIGYYGCLYCKKKFNTLTVYRKHKNHHMAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWFTEPKESIEETCPICNKRFYNLHKHMTYHEENKCKKCNEYFYSRADFDGHLCAIESDEEGTAYVGTEGTFQYEECRFCFKPITKKSTKRLHDQIHKGSGSISCRFCSMKFKTMDAFNIHAFSHRSRKYNKKPIKCRKCGEKFFKYGPFMKHMKLVHKCMKKLHYRAVVKPDKCVVCGEEFPNLHNHYRAHLLNQCQACLKYFTSYKVISAHECDKEDSDPSKVFTCDANLNELIKTYVPMDEKDDEKYYGHTDVDEEEEDDIMPQVVGEEEESQESQEFKDIPMLQSPIISDVLSLYKAEINGLGVVDGVVNNMVDNINEVVDITDDDSVDVDDSVIPVVVVIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785388;
- 90% Identity
- iTF_01230875;
- 80% Identity
- -