Ogra016247.1
Basic Information
- Insect
- Orthosia gracilis
- Gene Symbol
- -
- Assembly
- GCA_947562075.1
- Location
- OX387266.1:57751347-57757801[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00042 0.04 15.1 1.1 1 23 19 42 19 42 0.97 2 18 0.0011 0.1 13.9 0.2 1 23 115 138 115 138 0.97 3 18 0.2 19 6.7 0.1 2 23 165 186 164 186 0.96 4 18 0.72 68 5.0 1.3 1 23 208 230 208 230 0.97 5 18 1e-05 0.00096 20.3 1.4 1 23 234 256 234 256 0.98 6 18 2.9 2.7e+02 3.1 0.3 1 23 261 284 261 284 0.87 7 18 0.0088 0.84 11.0 0.6 1 23 290 313 290 313 0.90 8 18 0.18 18 6.8 1.3 1 14 320 333 320 335 0.92 9 18 0.19 18 6.8 0.1 1 23 468 490 468 490 0.92 10 18 6.1 5.8e+02 2.1 0.1 2 23 514 536 513 536 0.92 11 18 8.6e-06 0.00082 20.5 3.3 1 23 559 581 559 581 0.98 12 18 7e-05 0.0067 17.6 0.6 3 23 587 607 585 607 0.97 13 18 0.0013 0.12 13.7 1.3 1 23 615 638 615 638 0.94 14 18 4.7e-05 0.0044 18.2 1.1 1 23 644 667 644 667 0.98 15 18 0.27 26 6.3 1.7 1 23 673 696 673 696 0.96 16 18 1e-05 0.00098 20.2 0.4 1 23 702 724 702 724 0.97 17 18 4.1e-06 0.00039 21.5 1.1 1 23 730 752 730 752 0.99 18 18 0.00016 0.015 16.5 5.7 1 23 758 780 758 781 0.96
Sequence Information
- Coding Sequence
- ATGAGAGCAGCAAGGGACTCCCATAAGGCCTCCGTCCATCCCAAAGCCCCAAGATATGAATGTCCGCACTGCAATATAAGATTCGATAACTATTACGAAAGGATCGATCATATGAAGAACGCTCACAGTTCCGCTACCGAAGCGGAGGGGAATCTAGGCCTTAGACGCATTAGGAAGTTGAAGGAAAACGTTAGCGATCGGCAGATGCGCAGGAGACGACGCGCCAACAACCAGCTCCCCGAAGAATCGGAGAAAAGAATATCAAAAACTATGATGCGTCGAAACGCTCTCATTCTCCTAGAGTGTTCCACAGCCTGGGCCTTCCGATGGTTCCATAGCGCGTTTTACTGCTCATACTGCGACGCTAAGTTCGTCGATGTACCCCTTCTTCGCTCACATGTTAAAGTTAACCATCTAAACGACATACCCACAGACAGAATCTTTTCGAAGTTAAAAGAAAATAATATGGTCAAAGTAGATGTCGCAGAGCTTAGCTGTAGGTTATGTAGCAGAATTTTAAATAGCATCGACGCGTTGAAAGATCATCTTCTCATACACGGAAAGACTTTAAATGTAGAATATAGTGATGGAGTCCTTCCATTCAAGTTGGATGAAGAAGGTTTTACATGCCAGCTGTGCTTCGCCCAGTTCCTGACTTTTGCCAAAATGAACGAGCACATGAACACTCACTTTCAAAATTACATTTGTGATTCTTGCGGTAAAGCCTTTTCTTCTAAATCGAGGTTTAGAAAACATGTACAGTCGCATGAAAAGGGAAGCTTCCCTTGCGGGCAGTGTGATGAAGTTTTAGAAACCCGAGCGTCTCGGATGTGTCACATTATGCGAATTCATAGGAAAGGAGTACGCTACGCTTGTCCAAGATGCCCCGAAGTTTTTACGACGTATCACACAAGAGCGAAACATTTAGTTGAAACACACGCCCAACAGAGAAAAGAATACTATTGTAATGCTTGCGACAAGACGTTTGAAACGAGCTCCAAAAGGGCAGGGATGACTGAAGACAAGGATATGGCAGCAGAAACATCTACAAAGATATTGTGGATGAAAAAACGCGGATTAAAGGAAGACATGGCAAATGCAGCTATTATAATCAAACACTCGAATGCAGTGGTATTCAGATTGCATAGAGGCAAATTTATATGCAATAGAAGACAAAGATATGACAGCAGAATCCACTACAAAAATATCTTGGACAAGAAAACGTCGATTAAAAGAAGACACGGCAAATGCGGCTATGATATTAAAACACTCGAATGCAGTGGGCCCGTCGAACTCAAAGTTAAATGGAGACCCACACGCAAGTATAACGATCACAGAGATAATGCCGCTATCATTCTCGAAAGTTCCAACGCTTGTCCCTTTAGGTGGAGGCGAGGGACCTTCGCTTGTGCGTTTTGCCCGCTTTCCTTCGGAGACTTCAGCGCTGTCAAGCAGCATACCGTTGAACATCCTAATCGGATCGAAGCTCTCCGCAAAGCTCGACCCTTTGCTAACGTCAAAATGGAAGTCACTGAGCTCAGATGCGAGTTGTGTCTCATGCGAATGACGGACCTAGATGCTCTTTCCGAACATTTAATCAATGATCACAATAAACCAATCGCCACTAAACTCGGCTTAGGAGTAACGCCTTTCTATCTGACTGAAGACAAAGAATACAAGTGCACTCATTGCGACGAAACTTTCGTTACTTTCACTAATTTGAACACTCATTTGAACCTGCACTATCCGAATAGCATCTGTTTCCAATGCGGTAAAGCATTCTCTTCTGTATCCAGGTTAAAATCCCATCTGCTCACCCACGACACGAAAACTACAACCCAGTATAAATGCACTAAATGCGACCAAGTTTTCCCTACACGTGTCTTAAAAAATAATCATATAACCCAAAAACACGGCCCTGAATTCAGATATAAATGTCCTTACTGCAAAGAGTCTTTTAAAAACTACGCTGACAGAGGCAGGCATTTGAAAACGGCGCACGACAAAAAGATCGAGTACCCTTGCAGCTTGTGTTCTTCGGTTTTTGCCATGTGTAATCAAAGGACGAAGCATATTAAACAGGTTCATATGAGAATTAAGACATTTGCGTGCAATTTTTGCCCGTACAAATTTGTGACAGCTGCTCAATTGAGGAATCATATGATAAAACATGGAGGGGAGAGGAAATACCAATGCCAGGTCTGTAAGAAAGCGTATGCCAGGACTAAAACTTTGAGGGAACACATGCGGATACATAATAATGATAAGAGATTTTCTTGCGAGTTCTGTAATACTGCGTATGTTCAGAAATGTAGCTTACAGAGTCACATGAGAACGCACCATCCTACTGCAGAGCCTTTGAAAAAGATTAAATTAGATAATGTTTATTAA
- Protein Sequence
- MRAARDSHKASVHPKAPRYECPHCNIRFDNYYERIDHMKNAHSSATEAEGNLGLRRIRKLKENVSDRQMRRRRRANNQLPEESEKRISKTMMRRNALILLECSTAWAFRWFHSAFYCSYCDAKFVDVPLLRSHVKVNHLNDIPTDRIFSKLKENNMVKVDVAELSCRLCSRILNSIDALKDHLLIHGKTLNVEYSDGVLPFKLDEEGFTCQLCFAQFLTFAKMNEHMNTHFQNYICDSCGKAFSSKSRFRKHVQSHEKGSFPCGQCDEVLETRASRMCHIMRIHRKGVRYACPRCPEVFTTYHTRAKHLVETHAQQRKEYYCNACDKTFETSSKRAGMTEDKDMAAETSTKILWMKKRGLKEDMANAAIIIKHSNAVVFRLHRGKFICNRRQRYDSRIHYKNILDKKTSIKRRHGKCGYDIKTLECSGPVELKVKWRPTRKYNDHRDNAAIILESSNACPFRWRRGTFACAFCPLSFGDFSAVKQHTVEHPNRIEALRKARPFANVKMEVTELRCELCLMRMTDLDALSEHLINDHNKPIATKLGLGVTPFYLTEDKEYKCTHCDETFVTFTNLNTHLNLHYPNSICFQCGKAFSSVSRLKSHLLTHDTKTTTQYKCTKCDQVFPTRVLKNNHITQKHGPEFRYKCPYCKESFKNYADRGRHLKTAHDKKIEYPCSLCSSVFAMCNQRTKHIKQVHMRIKTFACNFCPYKFVTAAQLRNHMIKHGGERKYQCQVCKKAYARTKTLREHMRIHNNDKRFSCEFCNTAYVQKCSLQSHMRTHHPTAEPLKKIKLDNVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -