Ogra005247.1
Basic Information
- Insect
- Orthosia gracilis
- Gene Symbol
- -
- Assembly
- GCA_947562075.1
- Location
- OX387267.1:35380152-35403672[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.4 3.2e+02 2.9 0.7 2 23 269 290 268 290 0.84 2 13 0.0012 0.11 13.8 0.6 1 22 295 316 295 319 0.92 3 13 0.017 1.7 10.1 2.9 2 23 450 472 449 472 0.93 4 13 0.0028 0.27 12.5 0.0 1 23 478 500 478 500 0.95 5 13 0.023 2.2 9.7 0.1 1 23 512 535 512 535 0.89 6 13 2.4e-07 2.2e-05 25.4 3.5 1 23 540 562 540 562 0.98 7 13 0.00013 0.012 16.8 0.9 1 23 568 590 568 590 0.95 8 13 0.00012 0.011 16.9 4.9 1 23 596 618 596 618 0.98 9 13 1.1e-07 1.1e-05 26.4 0.4 1 23 624 646 624 646 0.98 10 13 0.0032 0.3 12.4 4.1 1 23 652 674 652 674 0.98 11 13 0.00029 0.028 15.6 0.1 1 22 680 701 680 701 0.95 12 13 6.6e-05 0.0063 17.7 0.8 1 23 708 730 708 730 0.98 13 13 5.9e-06 0.00056 21.0 3.6 1 23 736 759 736 759 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTAGTTCTTTACAATTCTAATGTTTGTCGATTATGTGGGGAAGAAAATGATAATGGAAATTTGTTATATTCGTGTGAAGAAAATAGTCAAAACTTAAGTGAAGTAATTAACACATATTTGCCAATCAAGGTTACTGATGATGGCCAACTGCCTCGTACCATTTGTCCAGGATGCACTATACAGCTGGAAGCCACCGTAGAATTTCTAACACTTATTATAAACGGACAAAAAGTTATTCGTGAACTTCATCTCAGAGAAAAAGAATACAAGAGAACTGTTCTTAATCCCCCTACAGAACAGGAAGTCGTAACGGAAAAAATCATTTATGAAGTTAATGCAAATGATGGAATGTACCAAGTGGAACATCCAATTTCCTTGCAAGTTGCTGGTCTCGAAAAGCCAAAACGCAAGCGAGGCAGACCTCCTAAAAAACCGAAAACTCCTGAGGAGTTAGCCAAGGAAGCCGCTGCAAAAGAGCAGGAGATAAAACGCGTTAAAAAGCAAGAAAGAGAATATGACCCAGTGTCAGGGACAGGGAAGCGGAGGAGGAAAACTCCAACTCGGTTCCGAGAAGCTGTTCAGGGTAAGGAGCTTGAGAGGATATTCAAAGAAGAAGGAGTAATAGATGGCGAGGAAAGTGAAGCTGATGTTAAGATAGAACTGCACCAAGACTTTAAGCCAACTGTGCCTAAGGAACCGGAAGTTATTGGTCATCTAGAGAATTCTGGAGAACTAGTAGTTGTGGTCAAGGGCAAGGGCCGTGGGAGGCCTAAAGGTCCCATGACTCAAACCCGCAAAGAATGCGCCATCTGCGGCATGGAATTCACCTGCAATGGACGATACATGTCGCATGTGGCCCAGCATGGCCCAGTCCTGTACCAGTGTGGGCAATGCTCCGAGACCTTCACTACTCTTTTAGACTTCAACAACCATCAGAAGGAACTCGGACACACCGGACAGAATATTATACCATGCAAGAAGAATGTTGAGAGAATTAGGGCTAAGAAAGGTGATAAACCAAGAACTGAAACAATCGTGATACCTGATGACCCTCAAACGCAAACAAAGAAGTCTGACACTGTACAAATATTAGAGAATGTGATATTACCTATACCTATAACAAACTCCATGCCGGATTTAAATCCTCAGCCAATAGTAATAATTGATGGTGTGAATGGGTCCGAGTTTCTGAACACACAGAGCCCTACTGTTGAAATTACATCTAGTCCTAGTGTTGATGGTGTTGTTAAAACTGTTGATTCGACCGCCGACGCCACTGCGACTGAAAAGTCGGATGATGTAGAACAAGTAGAACTGACTCCGTCTGGTAAACAAAGACTGAAGTGTAACCACTGCGAAAAGACCTTCGGTAGTAAGCAGAGCAAGTCCTTACACATCAAGGCCACCCACCAGGGCGAGCGGCCATACGTGTGCGGCGAGTGCGGCGCACGCTTCGCCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGGCGCCGCGCCGCCGGCAGCACGGCTAAGGGATATGCTTGTGATCTCTGTGGGAAGGTCCTAAACCACCCTTCGTCCGTGGTTTACCACAAAGAAGCAGAGCACGCGGGTCAGCGATACGTGTGCAACAAATGCGGCAAGTCGTTCAAGCACAAGCAGTTGCTGCAACGGCACCAGCTGGTGCACTCGCAGGACAGACCTTATAACTGTAAGTTGTGCAATGCTTCGTTCAAGACGAAAGCGAACTTACTGAACCACTCGCTGCTGCACACCGGCGTGAAGAAGTTCTCTTGTGACATATGCAAGCACAAGTTCGCGCACAAGACTAGTCTTACGCTGCATATGAGGTGGCATACAGGTCAGAAACCCTACTCGTGCAATGTTTGCGGGAAGAGCTTCAGTCAGAAAGGCAATCTATCAGAGCATGAACGTATCCACACCGGAGAGAAGCCCTTCCAGTGCTCCCTGTGCCCTCGCAAGTTTACGACGTCCAGCCAGCACCGCCTGCACGCGAGGCGACACAACTCTGACAAACCGTTCATTTGCGCGCATTGTGGCAAGAGATTCGTATCCCGCGGTTCATGGGCAGCACACGTACGGCGCGAAGGTGGGGGCCGTACGCACCGCTGCGGCGAGTGCGGACGTACGTTCGCGGAACGCTGGCCGCTACTGAAGCACCTGCGCAAGCACTCGGGCGAGCGGCCCTTCCGCTGTCCGCACTGTCCCAGGGCCTTCGCCGACTGTTCCAACCTCAACAAGCACAAGAAGCAAGTCCACAAACAGATCAGCCTACTGGCGAACTCGAACCAGCAATCGATTCCTAGCCCCATACCTCTGAAGATAGAACAGCCAGAGTCCGCGCTCATACAGTTAGAGGAACAGACCGTTGCCATCCCGGAGACTTCACCAGTCAAGCTGATAGAGGAAGCTACGGAGGACGAGTTGGAGGAGAGAGTCATCTATGTGACGTATGATGTGGATGATGCTGAGTCGCCTGCTTTCCATATACTGGATCCTGAACAGGCAGCCACACTACAAGACGACAAGGTGCTAACAACATGCGAGCTGTACTCGGGCGGCCCGTCACTACTAGTCCCGCAGCCCGAGTACGAGCAACTCGAGCTAGAACACGAGCAGCTAGAACTGCAGCACGAGCAGCTAGAACTGCAACACGAGCAACTAGAACTGCAGCACGAGCAGCTCGAGCAGGTGGAACTGCAGCAGCTACCTGAGGAGATGGTGCTGGAGGAACATAACCAGAATATGACTGTAACAGATGAGCAGGGCAATCCACTACACTTCACCATGCAGGATGGCACACGGCTCGCCATCACGTCCGCTGATGGAAAATCTTTGCAAGTGATAACTCATGATGGTCAAACAATACCTGTTGAGATTAACGGATACGCAGATGAGGAGGAGGTAGACAATCCCGACACAATAGTTCACCAGCTGAACCTACAGAAGAGCATCGACTCCAACGTGTCATCGCCCGTCACCCATTACTTTACTATTGTCTAA
- Protein Sequence
- MEVVLYNSNVCRLCGEENDNGNLLYSCEENSQNLSEVINTYLPIKVTDDGQLPRTICPGCTIQLEATVEFLTLIINGQKVIRELHLREKEYKRTVLNPPTEQEVVTEKIIYEVNANDGMYQVEHPISLQVAGLEKPKRKRGRPPKKPKTPEELAKEAAAKEQEIKRVKKQEREYDPVSGTGKRRRKTPTRFREAVQGKELERIFKEEGVIDGEESEADVKIELHQDFKPTVPKEPEVIGHLENSGELVVVVKGKGRGRPKGPMTQTRKECAICGMEFTCNGRYMSHVAQHGPVLYQCGQCSETFTTLLDFNNHQKELGHTGQNIIPCKKNVERIRAKKGDKPRTETIVIPDDPQTQTKKSDTVQILENVILPIPITNSMPDLNPQPIVIIDGVNGSEFLNTQSPTVEITSSPSVDGVVKTVDSTADATATEKSDDVEQVELTPSGKQRLKCNHCEKTFGSKQSKSLHIKATHQGERPYVCGECGARFAYPRSLALHAVSHRRRAAGSTAKGYACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQDRPYNCKLCNASFKTKANLLNHSLLHTGVKKFSCDICKHKFAHKTSLTLHMRWHTGQKPYSCNVCGKSFSQKGNLSEHERIHTGEKPFQCSLCPRKFTTSSQHRLHARRHNSDKPFICAHCGKRFVSRGSWAAHVRREGGGRTHRCGECGRTFAERWPLLKHLRKHSGERPFRCPHCPRAFADCSNLNKHKKQVHKQISLLANSNQQSIPSPIPLKIEQPESALIQLEEQTVAIPETSPVKLIEEATEDELEERVIYVTYDVDDAESPAFHILDPEQAATLQDDKVLTTCELYSGGPSLLVPQPEYEQLELEHEQLELQHEQLELQHEQLELQHEQLEQVELQQLPEEMVLEEHNQNMTVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITHDGQTIPVEINGYADEEEVDNPDTIVHQLNLQKSIDSNVSSPVTHYFTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00746034;
- 90% Identity
- -
- 80% Identity
- -